miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 193269 0.71 0.560323
Target:  5'- aGCAGc--AGCaaCAGCGGCGuGCGCCGGu -3'
miRNA:   3'- aUGUCucuUCG--GUCGCCGC-UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 191878 0.71 0.57987
Target:  5'- gGCGGAGggGgCGGCGGaGGCGggaucggcaCCGGg -3'
miRNA:   3'- aUGUCUCuuCgGUCGCCgCUGC---------GGCC- -5'
10961 3' -58.7 NC_002794.1 + 191653 0.71 0.570076
Target:  5'- aGCAGccc-GCCGGgGGaCGGCGCCGGc -3'
miRNA:   3'- aUGUCucuuCGGUCgCC-GCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 191510 0.67 0.808932
Target:  5'- --gAGAGguGCCAGCGcCGgGCGUCGGc -3'
miRNA:   3'- augUCUCuuCGGUCGCcGC-UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 191354 0.73 0.48441
Target:  5'- gUACAGAGGAGUCGG-GGaCGG-GCCGGa -3'
miRNA:   3'- -AUGUCUCUUCGGUCgCC-GCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 190979 0.72 0.49365
Target:  5'- aGCAGAGcAGGCagcGCGGCGACGgCGu -3'
miRNA:   3'- aUGUCUC-UUCGgu-CGCCGCUGCgGCc -5'
10961 3' -58.7 NC_002794.1 + 189856 0.66 0.833773
Target:  5'- cGCGGAGccGUCGGCGuCGuCGCCGc -3'
miRNA:   3'- aUGUCUCuuCGGUCGCcGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 188255 0.69 0.698216
Target:  5'- gGCGGcGgcGgUAGCGGCGG-GCCGGg -3'
miRNA:   3'- aUGUCuCuuCgGUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 186487 0.68 0.736662
Target:  5'- --uGGAGGGcCCGGCGGCG-CGCCu- -3'
miRNA:   3'- augUCUCUUcGGUCGCCGCuGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 185248 0.77 0.286705
Target:  5'- cACgAGAGAAagcGCCAGCGGaCGcCGCCGGc -3'
miRNA:   3'- aUG-UCUCUU---CGGUCGCC-GCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 184913 0.68 0.726202
Target:  5'- cGCGcGGGAacaucggcAGCCGGCGGuCGuccugccgcagcuGCGCCGGc -3'
miRNA:   3'- aUGU-CUCU--------UCGGUCGCC-GC-------------UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 183600 0.72 0.512366
Target:  5'- gGCGGAGGggGGCCGcgcGCGGcCGGCGCCc- -3'
miRNA:   3'- aUGUCUCU--UCGGU---CGCC-GCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 180726 0.67 0.817372
Target:  5'- -uCAGAGAcGC--GCGGaCGACGCCGu -3'
miRNA:   3'- auGUCUCUuCGguCGCC-GCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 180645 0.7 0.658937
Target:  5'- -cCAGAcGAcgAGCCAGCgcagGGCG-UGCCGGg -3'
miRNA:   3'- auGUCU-CU--UCGGUCG----CCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 180360 0.67 0.791607
Target:  5'- cGCAGAGGAcGaCCGGC-GCGAggacgcUGCCGGc -3'
miRNA:   3'- aUGUCUCUU-C-GGUCGcCGCU------GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 179975 0.7 0.619333
Target:  5'- aGCGGcAGGAGCCaaGGCGguggccGCGACGgCGGg -3'
miRNA:   3'- aUGUC-UCUUCGG--UCGC------CGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 179696 0.75 0.342356
Target:  5'- gGCGGcGgcGaCGGUGGCGACGCCGGc -3'
miRNA:   3'- aUGUCuCuuCgGUCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 179648 0.7 0.658937
Target:  5'- --aGGAGAAGUCAgGCGGgcuCGCCGGa -3'
miRNA:   3'- augUCUCUUCGGU-CGCCgcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 179603 0.71 0.57987
Target:  5'- cACGucGAGGAGCgGcGCGaGCGACuGCCGGg -3'
miRNA:   3'- aUGU--CUCUUCGgU-CGC-CGCUG-CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 176895 0.66 0.825655
Target:  5'- gGCucGAGggGaCCGGUGG-GAUuGCCGGg -3'
miRNA:   3'- aUGu-CUCuuC-GGUCGCCgCUG-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.