miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 176600 0.66 0.862265
Target:  5'- cACGGAGAgcGGCCGGCacggccauccucguGGCGuuCGgcCCGGa -3'
miRNA:   3'- aUGUCUCU--UCGGUCG--------------CCGCu-GC--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 156396 0.68 0.746081
Target:  5'- -cUAGAGcGGCCGGCGccGCGGCcgcggccacgGCCGGc -3'
miRNA:   3'- auGUCUCuUCGGUCGC--CGCUG----------CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 156197 0.69 0.688454
Target:  5'- -uCGGAGucGCCGGUcggagggccGGCGAcucCGCCGGc -3'
miRNA:   3'- auGUCUCuuCGGUCG---------CCGCU---GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 154365 0.73 0.48441
Target:  5'- cGCGGuccAGGCC-GCGGCGGCGgCGGg -3'
miRNA:   3'- aUGUCuc-UUCGGuCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 153533 0.68 0.717575
Target:  5'- --gGGAGAGGUgGGCGGCugGAUGCCc- -3'
miRNA:   3'- augUCUCUUCGgUCGCCG--CUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 150407 0.69 0.698216
Target:  5'- uUGCGGcAGAAGCCguGGCccGCGAgGCUGGa -3'
miRNA:   3'- -AUGUC-UCUUCGG--UCGc-CGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 149649 0.67 0.800341
Target:  5'- aUGCGGuucgccgaGGAGGCCgAGCGGgGGCGCg-- -3'
miRNA:   3'- -AUGUC--------UCUUCGG-UCGCCgCUGCGgcc -5'
10961 3' -58.7 NC_002794.1 + 149603 0.66 0.85707
Target:  5'- gACcGAGGAGCCcccGaCGGgGACGUgGGa -3'
miRNA:   3'- aUGuCUCUUCGGu--C-GCCgCUGCGgCC- -5'
10961 3' -58.7 NC_002794.1 + 148136 0.69 0.688454
Target:  5'- cGCGGGGccGCCGG-GGCGAgGgCGGu -3'
miRNA:   3'- aUGUCUCuuCGGUCgCCGCUgCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 147683 0.69 0.678648
Target:  5'- cGCucGAGGAcCCGGCGGCGAUGCgGc -3'
miRNA:   3'- aUGu-CUCUUcGGUCGCCGCUGCGgCc -5'
10961 3' -58.7 NC_002794.1 + 146999 0.68 0.76463
Target:  5'- gGCcGAcGucGgCGGCGGCGGcCGCCGGc -3'
miRNA:   3'- aUGuCU-CuuCgGUCGCCGCU-GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 146917 0.68 0.746081
Target:  5'- cGCGGGGAucGGCCGGaCGGagaGCGCuCGGu -3'
miRNA:   3'- aUGUCUCU--UCGGUC-GCCgc-UGCG-GCC- -5'
10961 3' -58.7 NC_002794.1 + 145928 0.71 0.573989
Target:  5'- aGCGGAGggGCCGGCGagaGCGguucgggagucgcgaGCGCCc- -3'
miRNA:   3'- aUGUCUCuuCGGUCGC---CGC---------------UGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 145811 0.67 0.817372
Target:  5'- gACGccGccGCCGGCGGCGA-GCCGa -3'
miRNA:   3'- aUGUcuCuuCGGUCGCCGCUgCGGCc -5'
10961 3' -58.7 NC_002794.1 + 145718 0.81 0.158286
Target:  5'- aACGGGGAucgGGCgcuggaGGCGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCUCU---UCGg-----UCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 145378 0.69 0.678648
Target:  5'- gGCGGAGAcGCUccgcucGGUGGCG-CGCCGc -3'
miRNA:   3'- aUGUCUCUuCGG------UCGCCGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 145186 0.66 0.833773
Target:  5'- -uCGGAGAuggucGCC-GCGGCGGCccuCCGGc -3'
miRNA:   3'- auGUCUCUu----CGGuCGCCGCUGc--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 145044 0.73 0.443036
Target:  5'- aUAC-GAGGuggucaacuucaccgAGCUGGCGGCGGgGCCGGa -3'
miRNA:   3'- -AUGuCUCU---------------UCGGUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 143258 0.66 0.84172
Target:  5'- gUGCAGgaGGAAGgcCCGGCc-CGGCGCCGGc -3'
miRNA:   3'- -AUGUC--UCUUC--GGUCGccGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 142951 0.69 0.688454
Target:  5'- --aGGGGAAGUCGGCGGCGucgagcuccuCGUCGa -3'
miRNA:   3'- augUCUCUUCGGUCGCCGCu---------GCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.