miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 71288 0.66 0.85707
Target:  5'- aUACGGAaaauAGCCGcCGGCG-CGCuCGGg -3'
miRNA:   3'- -AUGUCUcu--UCGGUcGCCGCuGCG-GCC- -5'
10961 3' -58.7 NC_002794.1 + 100535 0.66 0.863732
Target:  5'- gGCAccGAGGAGCagcgGGCGGCcuuccccGugGCCGa -3'
miRNA:   3'- aUGU--CUCUUCGg---UCGCCG-------CugCGGCc -5'
10961 3' -58.7 NC_002794.1 + 52887 0.66 0.864463
Target:  5'- gAUGGuGggGUCGaacGCGGCGcCGCCGc -3'
miRNA:   3'- aUGUCuCuuCGGU---CGCCGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 176600 0.66 0.862265
Target:  5'- cACGGAGAgcGGCCGGCacggccauccucguGGCGuuCGgcCCGGa -3'
miRNA:   3'- aUGUCUCU--UCGGUCG--------------CCGCu-GC--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 110450 0.66 0.864463
Target:  5'- gGCGGAGGccGGCgAGcCGGCu-CGUCGGc -3'
miRNA:   3'- aUGUCUCU--UCGgUC-GCCGcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 41227 0.66 0.84172
Target:  5'- -cCGGGGAuuccucccacGCC-GCGGCcgccGACGCCGGc -3'
miRNA:   3'- auGUCUCUu---------CGGuCGCCG----CUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 143258 0.66 0.84172
Target:  5'- gUGCAGgaGGAAGgcCCGGCc-CGGCGCCGGc -3'
miRNA:   3'- -AUGUC--UCUUC--GGUCGccGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 109156 0.66 0.832969
Target:  5'- gGCGGGGGAGauggcgaCgAGCGGCGguaGCGgCGGa -3'
miRNA:   3'- aUGUCUCUUC-------GgUCGCCGC---UGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 115916 0.66 0.833773
Target:  5'- --uGGGGuggacuuGGCgCGGCGGCGG-GCCGGc -3'
miRNA:   3'- augUCUCu------UCG-GUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 115969 0.66 0.833773
Target:  5'- gUGgGGGGGAGCgggaCGGgGaGCGGCGCCGcGg -3'
miRNA:   3'- -AUgUCUCUUCG----GUCgC-CGCUGCGGC-C- -5'
10961 3' -58.7 NC_002794.1 + 32269 0.66 0.833773
Target:  5'- gACGGcc-GGCCgaucGGCGaGCGACGCCGc -3'
miRNA:   3'- aUGUCucuUCGG----UCGC-CGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 68807 0.66 0.833773
Target:  5'- aACAGGacGAcucgAGaCAGaCGGCGACGCCGc -3'
miRNA:   3'- aUGUCU--CU----UCgGUC-GCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 189856 0.66 0.833773
Target:  5'- cGCGGAGccGUCGGCGuCGuCGCCGc -3'
miRNA:   3'- aUGUCUCuuCGGUCGCcGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 103798 0.66 0.833773
Target:  5'- aGCuuGAGGugcGCCuGCgacGGCGGCGCCGa -3'
miRNA:   3'- aUGu-CUCUu--CGGuCG---CCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 145186 0.66 0.833773
Target:  5'- -uCGGAGAuggucGCC-GCGGCGGCccuCCGGc -3'
miRNA:   3'- auGUCUCUu----CGGuCGCCGCUGc--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 17127 0.66 0.84172
Target:  5'- gACGGucGAAGCCGGCgaaacGGCGguaGCGCCc- -3'
miRNA:   3'- aUGUCu-CUUCGGUCG-----CCGC---UGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 70285 0.66 0.84172
Target:  5'- -cCGGAGAgcaGGCCGGgGG-GGC-CCGGg -3'
miRNA:   3'- auGUCUCU---UCGGUCgCCgCUGcGGCC- -5'
10961 3' -58.7 NC_002794.1 + 94136 0.66 0.84172
Target:  5'- ----uGGAAGguCCGaccGCGGCGGCGCUGGa -3'
miRNA:   3'- augucUCUUC--GGU---CGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 123324 0.66 0.84172
Target:  5'- aGCAGGGGccgcAGCUGGgGGUGGCGUuccaaCGGu -3'
miRNA:   3'- aUGUCUCU----UCGGUCgCCGCUGCG-----GCC- -5'
10961 3' -58.7 NC_002794.1 + 138602 0.66 0.84172
Target:  5'- gGCGGAGAgcGGCUuugugAGUcGCGAUGCCGc -3'
miRNA:   3'- aUGUCUCU--UCGG-----UCGcCGCUGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.