miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 5' -53.8 NC_002794.1 + 139 0.66 0.978735
Target:  5'- gCCCGGGACCGCCGcaGGGgc-GCa- -3'
miRNA:   3'- aGGGUCUUGGUGGCcaCCUuuaCGac -5'
10961 5' -53.8 NC_002794.1 + 175566 0.66 0.973795
Target:  5'- aCCCguuGGAAacCCGCCGGUGGugucAGUGgaGc -3'
miRNA:   3'- aGGG---UCUU--GGUGGCCACCu---UUACgaC- -5'
10961 5' -53.8 NC_002794.1 + 105675 0.66 0.973795
Target:  5'- gCCCGG-ACCGCCGGgaacgucGGAAccGCc- -3'
miRNA:   3'- aGGGUCuUGGUGGCCa------CCUUuaCGac -5'
10961 5' -53.8 NC_002794.1 + 86081 0.66 0.973795
Target:  5'- aUCUCAucGGACCGCCGccgGGAcgGAUGCUc -3'
miRNA:   3'- -AGGGU--CUUGGUGGCca-CCU--UUACGAc -5'
10961 5' -53.8 NC_002794.1 + 128465 0.66 0.971034
Target:  5'- gCCCAGGACgACCGGUcaccGGGuc-GCg- -3'
miRNA:   3'- aGGGUCUUGgUGGCCA----CCUuuaCGac -5'
10961 5' -53.8 NC_002794.1 + 147822 0.67 0.964899
Target:  5'- cUCCAGAGCaccuuGCCGGUGGucgagccguuGUGCa- -3'
miRNA:   3'- aGGGUCUUGg----UGGCCACCuu--------UACGac -5'
10961 5' -53.8 NC_002794.1 + 191649 0.67 0.957905
Target:  5'- gUCCAGcAGcCCGCCGG-GGGAcgGCg- -3'
miRNA:   3'- aGGGUC-UU-GGUGGCCaCCUUuaCGac -5'
10961 5' -53.8 NC_002794.1 + 62600 0.67 0.954074
Target:  5'- -gCCAGGGCCACCGccgccuucGGAGA-GCUGc -3'
miRNA:   3'- agGGUCUUGGUGGCca------CCUUUaCGAC- -5'
10961 5' -53.8 NC_002794.1 + 41858 0.67 0.950013
Target:  5'- cCCCAG-GCCGCCGGgcagGGccGGGcGCUGc -3'
miRNA:   3'- aGGGUCuUGGUGGCCa---CC--UUUaCGAC- -5'
10961 5' -53.8 NC_002794.1 + 111503 0.67 0.950013
Target:  5'- -gCCAGGACgagagACCGGagGGAcGUGCUGa -3'
miRNA:   3'- agGGUCUUGg----UGGCCa-CCUuUACGAC- -5'
10961 5' -53.8 NC_002794.1 + 153286 0.68 0.94572
Target:  5'- aCCCGucGCCcgagacgcagGCCGG-GGAGcgGCUGg -3'
miRNA:   3'- aGGGUcuUGG----------UGGCCaCCUUuaCGAC- -5'
10961 5' -53.8 NC_002794.1 + 73823 0.68 0.941192
Target:  5'- gCCCc--ACCACaCGGUGGAGcUGUUGu -3'
miRNA:   3'- aGGGucuUGGUG-GCCACCUUuACGAC- -5'
10961 5' -53.8 NC_002794.1 + 187617 0.68 0.920692
Target:  5'- gCCCAGAGCCGCUGGa-GAGGcGCa- -3'
miRNA:   3'- aGGGUCUUGGUGGCCacCUUUaCGac -5'
10961 5' -53.8 NC_002794.1 + 123602 0.69 0.914967
Target:  5'- gUCCCGGAA-CGCCuGUGGGAcgcGCUGc -3'
miRNA:   3'- -AGGGUCUUgGUGGcCACCUUua-CGAC- -5'
10961 5' -53.8 NC_002794.1 + 107212 0.69 0.91261
Target:  5'- gCCCGGcGCCGCCGGgcggcgcgcgacgGGGGcgGCg- -3'
miRNA:   3'- aGGGUCuUGGUGGCCa------------CCUUuaCGac -5'
10961 5' -53.8 NC_002794.1 + 154186 0.69 0.909004
Target:  5'- -aUCAGGGCCGCCGacgaucUGGAGAcGCUGg -3'
miRNA:   3'- agGGUCUUGGUGGCc-----ACCUUUaCGAC- -5'
10961 5' -53.8 NC_002794.1 + 98267 0.69 0.90217
Target:  5'- gCCUGGugucucgaacaacGGCgCACCGG-GGAGAUGCUGc -3'
miRNA:   3'- aGGGUC-------------UUG-GUGGCCaCCUUUACGAC- -5'
10961 5' -53.8 NC_002794.1 + 116836 0.69 0.889702
Target:  5'- gUCCCGGGA-CGCgCGGUGGAucuucAUGCg- -3'
miRNA:   3'- -AGGGUCUUgGUG-GCCACCUu----UACGac -5'
10961 5' -53.8 NC_002794.1 + 88241 0.69 0.889702
Target:  5'- aCCCAGAACCcggaaauuuCCgGGUGGAAGcgGCa- -3'
miRNA:   3'- aGGGUCUUGGu--------GG-CCACCUUUa-CGac -5'
10961 5' -53.8 NC_002794.1 + 124488 0.71 0.820082
Target:  5'- gCCCGG-ACCGCCGGaUGGAGucGCg- -3'
miRNA:   3'- aGGGUCuUGGUGGCC-ACCUUuaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.