Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10963 | 3' | -55.9 | NC_002794.1 | + | 105899 | 0.66 | 0.943612 |
Target: 5'- -aGGAGUCG-CCgCG-GCGGCGGcGCUa -3' miRNA: 3'- ugCCUCAGCaGGaGCuUGCUGUC-CGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 39051 | 0.66 | 0.957227 |
Target: 5'- gGCGGgcaccacgugaaccAGUCGUCCcgCGAcaucgccuacauggGCGACAG-CCu -3' miRNA: 3'- -UGCC--------------UCAGCAGGa-GCU--------------UGCUGUCcGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 93996 | 0.66 | 0.951924 |
Target: 5'- cGCGGA--CG-CCggCGccGGCGGCGGGCCg -3' miRNA: 3'- -UGCCUcaGCaGGa-GC--UUGCUGUCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 114319 | 0.66 | 0.955381 |
Target: 5'- cCGGAGgCGcUCCUCGuagucccgccgcAGCGGCucguccgccgccaGGGCCg -3' miRNA: 3'- uGCCUCaGC-AGGAGC------------UUGCUG-------------UCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 120032 | 0.66 | 0.955755 |
Target: 5'- cGCGGGGaCGUCgUCauGACGGCGgcgguggcGGCCg -3' miRNA: 3'- -UGCCUCaGCAGgAGc-UUGCUGU--------CCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 14073 | 0.66 | 0.947878 |
Target: 5'- gGCGGAGcgccccagcuUUGUCCUC--ACGGuCGGGUCu -3' miRNA: 3'- -UGCCUC----------AGCAGGAGcuUGCU-GUCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 195043 | 0.66 | 0.947878 |
Target: 5'- -aGGuGcaUCGUCgUCGu-CGACAGGUCg -3' miRNA: 3'- ugCCuC--AGCAGgAGCuuGCUGUCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 114581 | 0.66 | 0.947461 |
Target: 5'- aGCGGAGggugcUCGUCgCUCuGGACGAgcucuucCAGGUg -3' miRNA: 3'- -UGCCUC-----AGCAG-GAG-CUUGCU-------GUCCGg -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 23697 | 0.66 | 0.947461 |
Target: 5'- cGCcGAGgccccgaagCGUCC-CGAaccgcgcGCGGCGGGCCc -3' miRNA: 3'- -UGcCUCa--------GCAGGaGCU-------UGCUGUCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 89397 | 0.66 | 0.959372 |
Target: 5'- cGCGGuGagGUCCgUgGAGCGcCGGcGCCa -3' miRNA: 3'- -UGCCuCagCAGG-AgCUUGCuGUC-CGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 112621 | 0.66 | 0.959372 |
Target: 5'- uGCGc-GUCGUCCacgggcggcuucUCGAGCaGCAGGCa -3' miRNA: 3'- -UGCcuCAGCAGG------------AGCUUGcUGUCCGg -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 111313 | 0.66 | 0.959372 |
Target: 5'- gACGGAGaCG-CCgggCcAGCGGCgcGGGCCg -3' miRNA: 3'- -UGCCUCaGCaGGa--GcUUGCUG--UCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 143892 | 0.66 | 0.959372 |
Target: 5'- cGCcGAG-CGUCCUguUGAccuGCGACGgGGCCu -3' miRNA: 3'- -UGcCUCaGCAGGA--GCU---UGCUGU-CCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 181904 | 0.66 | 0.959372 |
Target: 5'- aGCGcGGGUCGUacaccaCC-CGcGCGAC-GGCCg -3' miRNA: 3'- -UGC-CUCAGCA------GGaGCuUGCUGuCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 137727 | 0.66 | 0.959372 |
Target: 5'- uUGGAG-CGUCa---GGCGAUGGGCCg -3' miRNA: 3'- uGCCUCaGCAGgagcUUGCUGUCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 143328 | 0.66 | 0.959372 |
Target: 5'- uCGGucgCGUgCUCGGGCaGCGGGCUc -3' miRNA: 3'- uGCCucaGCAgGAGCUUGcUGUCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 133377 | 0.66 | 0.959372 |
Target: 5'- uCGGucGUCGUCCggCGGucAUGAUcGGCCc -3' miRNA: 3'- uGCCu-CAGCAGGa-GCU--UGCUGuCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 99709 | 0.66 | 0.959372 |
Target: 5'- cGCGGA--UGUUCUUucGCGACcGGCCg -3' miRNA: 3'- -UGCCUcaGCAGGAGcuUGCUGuCCGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 114507 | 0.66 | 0.959372 |
Target: 5'- cCGGAc-CGUCCcggagcgagUCGAGCGGCAG-CCg -3' miRNA: 3'- uGCCUcaGCAGG---------AGCUUGCUGUCcGG- -5' |
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10963 | 3' | -55.9 | NC_002794.1 | + | 157833 | 0.66 | 0.959372 |
Target: 5'- gACGGAGUUGaUCCUUcuAGCGGauaauccGGCCa -3' miRNA: 3'- -UGCCUCAGC-AGGAGc-UUGCUgu-----CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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