miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 3' -55.9 NC_002794.1 + 142961 0.71 0.740914
Target:  5'- gGCGGcGUCGagcUCCUCGu-CGAgGGGCUg -3'
miRNA:   3'- -UGCCuCAGC---AGGAGCuuGCUgUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 143724 0.71 0.740914
Target:  5'- gGCGGGcGUCGUCCUCGcccGCcgGACGcGCCg -3'
miRNA:   3'- -UGCCU-CAGCAGGAGCu--UG--CUGUcCGG- -5'
10963 3' -55.9 NC_002794.1 + 43026 0.71 0.740914
Target:  5'- -aGGucGUCGgccUCCaUCGcGCGGCAGGCCg -3'
miRNA:   3'- ugCCu-CAGC---AGG-AGCuUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 123206 0.71 0.749376
Target:  5'- uCGGAGauggaccuguacaUCGU-CUCGAGCGGCcuGGCCa -3'
miRNA:   3'- uGCCUC-------------AGCAgGAGCUUGCUGu-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 37365 0.71 0.750311
Target:  5'- -aGGuAGUCGaagCUCGGGCG-CAGGCCg -3'
miRNA:   3'- ugCC-UCAGCag-GAGCUUGCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 154325 0.71 0.750311
Target:  5'- aGCGGcgucGGUCGUCC-CGggUGcCGcGGCCg -3'
miRNA:   3'- -UGCC----UCAGCAGGaGCuuGCuGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 140192 0.71 0.759612
Target:  5'- gACGGcGUCGUCgagGGGCGACccGGGCCg -3'
miRNA:   3'- -UGCCuCAGCAGgagCUUGCUG--UCCGG- -5'
10963 3' -55.9 NC_002794.1 + 90480 0.71 0.768805
Target:  5'- gGCGGGGccgcCGUCC-CGcGCGAUcGGCCg -3'
miRNA:   3'- -UGCCUCa---GCAGGaGCuUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 118300 0.71 0.768805
Target:  5'- cCGGGcgcgucgcucGUCGUCgUCGucGCGACGGGCg -3'
miRNA:   3'- uGCCU----------CAGCAGgAGCu-UGCUGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 156382 0.71 0.777885
Target:  5'- cACGGGGUCuUCUUCuaGAGCGGCcGGCg -3'
miRNA:   3'- -UGCCUCAGcAGGAG--CUUGCUGuCCGg -5'
10963 3' -55.9 NC_002794.1 + 180590 0.71 0.777885
Target:  5'- cACGGcagcAGcUGUCCUCGcGCcGCGGGCCa -3'
miRNA:   3'- -UGCC----UCaGCAGGAGCuUGcUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 22534 0.7 0.795667
Target:  5'- gACGGAGUCGggauccggaccgUCCgccaccgcCGAcACGGCAcGGCCg -3'
miRNA:   3'- -UGCCUCAGC------------AGGa-------GCU-UGCUGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 123436 0.7 0.804353
Target:  5'- gGCGGuGacCGUCgC-CGAGCGGCuGGCCg -3'
miRNA:   3'- -UGCCuCa-GCAG-GaGCUUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 6517 0.7 0.812893
Target:  5'- gUGGAGUCcaCCUguUGAugGAcCGGGCCg -3'
miRNA:   3'- uGCCUCAGcaGGA--GCUugCU-GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 47641 0.7 0.821278
Target:  5'- aACGGcacguGGUCGUCC-CGAACGAUcggacaguGGUCg -3'
miRNA:   3'- -UGCC-----UCAGCAGGaGCUUGCUGu-------CCGG- -5'
10963 3' -55.9 NC_002794.1 + 149671 0.7 0.821278
Target:  5'- aGCGGGGgcgCGUCg-CGcuCGACuGGCCg -3'
miRNA:   3'- -UGCCUCa--GCAGgaGCuuGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 137620 0.7 0.829502
Target:  5'- gGCGGcGGUgcccacgacgaCGUCCUggCGGGCGcCGGGCCu -3'
miRNA:   3'- -UGCC-UCA-----------GCAGGA--GCUUGCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 148079 0.69 0.837556
Target:  5'- -gGGAGUgG-CCUCGAGCGaggaGCAGcuGCCg -3'
miRNA:   3'- ugCCUCAgCaGGAGCUUGC----UGUC--CGG- -5'
10963 3' -55.9 NC_002794.1 + 41701 0.69 0.837556
Target:  5'- cCGGA-UCGUCC-CGGGCGcGCAGGUa -3'
miRNA:   3'- uGCCUcAGCAGGaGCUUGC-UGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 11896 0.69 0.837556
Target:  5'- aGCGGGuUCGUgCUCGccggguuccuGACGAC-GGCCa -3'
miRNA:   3'- -UGCCUcAGCAgGAGC----------UUGCUGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.