miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 3' -55.9 NC_002794.1 + 42163 0.66 0.943612
Target:  5'- gACGGAGaacgucUCGUCCgucucCGccACGAUcGGCCg -3'
miRNA:   3'- -UGCCUC------AGCAGGa----GCu-UGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 105899 0.66 0.943612
Target:  5'- -aGGAGUCG-CCgCG-GCGGCGGcGCUa -3'
miRNA:   3'- ugCCUCAGCaGGaGCuUGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 113916 0.67 0.939125
Target:  5'- -aGGccuccaGGUCGgCCgcCGAgGCGACGGGCCg -3'
miRNA:   3'- ugCC------UCAGCaGGa-GCU-UGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 13785 0.67 0.939125
Target:  5'- cCGGguggcuccGGcCGUCUUC--GCGACGGGCCc -3'
miRNA:   3'- uGCC--------UCaGCAGGAGcuUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 83857 0.67 0.939125
Target:  5'- uCGGGaagccGUCGUCCcggUCGGcGCGAC-GGCCc -3'
miRNA:   3'- uGCCU-----CAGCAGG---AGCU-UGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 42463 0.67 0.939125
Target:  5'- cAUGGcGUCGUCCaugUCGcGCGcGCcgGGGCCg -3'
miRNA:   3'- -UGCCuCAGCAGG---AGCuUGC-UG--UCCGG- -5'
10963 3' -55.9 NC_002794.1 + 112761 0.67 0.939125
Target:  5'- gGCGGGGUCGgggugaggUCUCGGAgGACGucCCg -3'
miRNA:   3'- -UGCCUCAGCa-------GGAGCUUgCUGUccGG- -5'
10963 3' -55.9 NC_002794.1 + 189856 0.67 0.939125
Target:  5'- cGCGGAGccgucggCGUCgUCGccgcCGACcGGCCc -3'
miRNA:   3'- -UGCCUCa------GCAGgAGCuu--GCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 136317 0.67 0.939125
Target:  5'- uCGGAG-CGcccgcagcucUUCUCGGugG-CGGGCCa -3'
miRNA:   3'- uGCCUCaGC----------AGGAGCUugCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 192986 0.67 0.939125
Target:  5'- gGCGcGGUCGcCCUCGcccGGCGuguGCAGcGCCa -3'
miRNA:   3'- -UGCcUCAGCaGGAGC---UUGC---UGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 20530 0.67 0.939125
Target:  5'- aACGGAcuggCGUUCgCG-ACGACGGGCg -3'
miRNA:   3'- -UGCCUca--GCAGGaGCuUGCUGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 22598 0.67 0.934415
Target:  5'- uCGGcacGGUCGggaCgCUCGAGcCGAuCGGGCCg -3'
miRNA:   3'- uGCC---UCAGCa--G-GAGCUU-GCU-GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 146332 0.67 0.934415
Target:  5'- gGCGGAuucgacccCGUCgUCGAucGCGGC-GGCCg -3'
miRNA:   3'- -UGCCUca------GCAGgAGCU--UGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 82445 0.67 0.932958
Target:  5'- cGCGGcucggcacGGUCGgcccgaCCUCGAcgccgucggccuccGCGACGcGGCCc -3'
miRNA:   3'- -UGCC--------UCAGCa-----GGAGCU--------------UGCUGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 65948 0.67 0.92948
Target:  5'- gGCGGuaUCGUCg-CGAGCGGCGGcGUCu -3'
miRNA:   3'- -UGCCucAGCAGgaGCUUGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 138668 0.67 0.92948
Target:  5'- uGCGGAuUgGUCUgCGuGGCGGCGGGUCg -3'
miRNA:   3'- -UGCCUcAgCAGGaGC-UUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 44177 0.67 0.92948
Target:  5'- aGCGGcGGcUCGUCgaCUcCGGGCGAagcCGGGCCg -3'
miRNA:   3'- -UGCC-UC-AGCAG--GA-GCUUGCU---GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 118251 0.67 0.92948
Target:  5'- gGCGGgcuggaGGUCGgCCg-GGGCGGCGGcGCCg -3'
miRNA:   3'- -UGCC------UCAGCaGGagCUUGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 179171 0.67 0.924321
Target:  5'- cGCGacaGGUCGUCC-CGGACcaccGCAGGCa -3'
miRNA:   3'- -UGCc--UCAGCAGGaGCUUGc---UGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 65235 0.67 0.924321
Target:  5'- gGCGGcGGUCGccgcggcggcgaUCCggccucgcCGAGCGGCGGcGCCu -3'
miRNA:   3'- -UGCC-UCAGC------------AGGa-------GCUUGCUGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.