miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 3' -55.9 NC_002794.1 + 37325 0.67 0.918936
Target:  5'- gACGGAG-CGguggggCC-CGGGCGgcaGCAGGUCg -3'
miRNA:   3'- -UGCCUCaGCa-----GGaGCUUGC---UGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 19506 0.67 0.918936
Target:  5'- gGCGGAGgucgCGcCgCUCGGagcgccggcGCGGCGcGGCCc -3'
miRNA:   3'- -UGCCUCa---GCaG-GAGCU---------UGCUGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 55342 0.67 0.918936
Target:  5'- cCGGGGUCGcgCC-CGAgGCGGCcgaggcGGCCg -3'
miRNA:   3'- uGCCUCAGCa-GGaGCU-UGCUGu-----CCGG- -5'
10963 3' -55.9 NC_002794.1 + 76320 0.67 0.918936
Target:  5'- cCGGcaaccAGUCGUCCUCccuccCGGC-GGCCg -3'
miRNA:   3'- uGCC-----UCAGCAGGAGcuu--GCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 184487 0.67 0.918936
Target:  5'- cGCGGGGcccCGgacgCC-CGGGCGGCgcGGGCCc -3'
miRNA:   3'- -UGCCUCa--GCa---GGaGCUUGCUG--UCCGG- -5'
10963 3' -55.9 NC_002794.1 + 70203 0.67 0.918385
Target:  5'- aGCGGAGauccagcUCGcCCggacggucgggCGGGCGGCcGGCCg -3'
miRNA:   3'- -UGCCUC-------AGCaGGa----------GCUUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 98006 0.67 0.913327
Target:  5'- gACGGGGauccCGUgaucuuuaCCaCGAACGGCGGGCUc -3'
miRNA:   3'- -UGCCUCa---GCA--------GGaGCUUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 44279 0.67 0.913327
Target:  5'- gACGGAGgaGUCCgCGccCGcCGGGCCg -3'
miRNA:   3'- -UGCCUCagCAGGaGCuuGCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 188999 0.67 0.913327
Target:  5'- aGCGGcAGcUC-UCCagGucGCGACAGGCCa -3'
miRNA:   3'- -UGCC-UC-AGcAGGagCu-UGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 89819 0.67 0.913327
Target:  5'- gUGGGGUgCGUCCuggggaacgagUCGGuCGGCcGGCCg -3'
miRNA:   3'- uGCCUCA-GCAGG-----------AGCUuGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 4808 0.68 0.907495
Target:  5'- uACGGAGcgcgucgCGUUCgUCGAACGGuuguuGGCCa -3'
miRNA:   3'- -UGCCUCa------GCAGG-AGCUUGCUgu---CCGG- -5'
10963 3' -55.9 NC_002794.1 + 141799 0.68 0.907495
Target:  5'- gGCGcGGGUCGgCCUCGGACaGCcGGUUg -3'
miRNA:   3'- -UGC-CUCAGCaGGAGCUUGcUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 119244 0.68 0.907495
Target:  5'- -aGGAGcgUGUCCUCGG-CGGC-GGCg -3'
miRNA:   3'- ugCCUCa-GCAGGAGCUuGCUGuCCGg -5'
10963 3' -55.9 NC_002794.1 + 140019 0.68 0.907495
Target:  5'- cGCGGAGgccgCGgccCCcgCGGGCGGCGGGagaCa -3'
miRNA:   3'- -UGCCUCa---GCa--GGa-GCUUGCUGUCCg--G- -5'
10963 3' -55.9 NC_002794.1 + 119503 0.68 0.907495
Target:  5'- uCGGGGUCGUCggCGGcGCGGagccGGCCg -3'
miRNA:   3'- uGCCUCAGCAGgaGCU-UGCUgu--CCGG- -5'
10963 3' -55.9 NC_002794.1 + 49136 0.68 0.907495
Target:  5'- cCGGAGgUCGUUgUCGAccCGaaaccaGCGGGCCg -3'
miRNA:   3'- uGCCUC-AGCAGgAGCUu-GC------UGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 106957 0.68 0.9069
Target:  5'- cUGGAgacacgcGUCG-CCUCGcGCGGC-GGCCg -3'
miRNA:   3'- uGCCU-------CAGCaGGAGCuUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 153057 0.68 0.901442
Target:  5'- gGCGGAcg-GUCCcCGAGCGAC-GGUCg -3'
miRNA:   3'- -UGCCUcagCAGGaGCUUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 149514 0.68 0.901442
Target:  5'- gACGGGGUCGUcgCCggGAGCGGaccugGGGCg -3'
miRNA:   3'- -UGCCUCAGCA--GGagCUUGCUg----UCCGg -5'
10963 3' -55.9 NC_002794.1 + 77996 0.68 0.901442
Target:  5'- gGCGGGcGUUGUUC-CG-GCGGCGGcGCCg -3'
miRNA:   3'- -UGCCU-CAGCAGGaGCuUGCUGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.