miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 3' -55.9 NC_002794.1 + 4808 0.68 0.907495
Target:  5'- uACGGAGcgcgucgCGUUCgUCGAACGGuuguuGGCCa -3'
miRNA:   3'- -UGCCUCa------GCAGG-AGCUUGCUgu---CCGG- -5'
10963 3' -55.9 NC_002794.1 + 6517 0.7 0.812893
Target:  5'- gUGGAGUCcaCCUguUGAugGAcCGGGCCg -3'
miRNA:   3'- uGCCUCAGcaGGA--GCUugCU-GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 7832 0.69 0.845435
Target:  5'- -gGGGGcCGUCCaUCgGGACGGgGGGUCa -3'
miRNA:   3'- ugCCUCaGCAGG-AG-CUUGCUgUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 11896 0.69 0.837556
Target:  5'- aGCGGGuUCGUgCUCGccggguuccuGACGAC-GGCCa -3'
miRNA:   3'- -UGCCUcAGCAgGAGC----------UUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 13118 0.68 0.89453
Target:  5'- gGCGGGGUCG-CCgcgCGGcucgcucGCG-CGGGUCg -3'
miRNA:   3'- -UGCCUCAGCaGGa--GCU-------UGCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 13785 0.67 0.939125
Target:  5'- cCGGguggcuccGGcCGUCUUC--GCGACGGGCCc -3'
miRNA:   3'- uGCC--------UCaGCAGGAGcuUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 14073 0.66 0.947878
Target:  5'- gGCGGAGcgccccagcuUUGUCCUC--ACGGuCGGGUCu -3'
miRNA:   3'- -UGCCUC----------AGCAGGAGcuUGCU-GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 16291 0.68 0.895169
Target:  5'- gGCGGAGUCuagCCUggCGGccGCGGCcGGCUg -3'
miRNA:   3'- -UGCCUCAGca-GGA--GCU--UGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 18591 0.66 0.962781
Target:  5'- gACGGAacacaacacGUCuaCCUCG-ACGGCAccGGCCg -3'
miRNA:   3'- -UGCCU---------CAGcaGGAGCuUGCUGU--CCGG- -5'
10963 3' -55.9 NC_002794.1 + 19506 0.67 0.918936
Target:  5'- gGCGGAGgucgCGcCgCUCGGagcgccggcGCGGCGcGGCCc -3'
miRNA:   3'- -UGCCUCa---GCaG-GAGCU---------UGCUGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 20530 0.67 0.939125
Target:  5'- aACGGAcuggCGUUCgCG-ACGACGGGCg -3'
miRNA:   3'- -UGCCUca--GCAGGaGCuUGCUGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 22534 0.7 0.795667
Target:  5'- gACGGAGUCGggauccggaccgUCCgccaccgcCGAcACGGCAcGGCCg -3'
miRNA:   3'- -UGCCUCAGC------------AGGa-------GCU-UGCUGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 22598 0.67 0.934415
Target:  5'- uCGGcacGGUCGggaCgCUCGAGcCGAuCGGGCCg -3'
miRNA:   3'- uGCC---UCAGCa--G-GAGCUU-GCU-GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 23697 0.66 0.947461
Target:  5'- cGCcGAGgccccgaagCGUCC-CGAaccgcgcGCGGCGGGCCc -3'
miRNA:   3'- -UGcCUCa--------GCAGGaGCU-------UGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 30337 0.74 0.613621
Target:  5'- cCGaAGUCGauggccaccuUCC-CGAGCGACAGGCCc -3'
miRNA:   3'- uGCcUCAGC----------AGGaGCUUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 32694 0.69 0.845435
Target:  5'- cCGGAGgCGUCg-CGGGCGACucGCCg -3'
miRNA:   3'- uGCCUCaGCAGgaGCUUGCUGucCGG- -5'
10963 3' -55.9 NC_002794.1 + 36934 0.71 0.740914
Target:  5'- cGCGGAGgagaaaGUCCgcgucgCGcGGCGGCAGGCa -3'
miRNA:   3'- -UGCCUCag----CAGGa-----GC-UUGCUGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 37325 0.67 0.918936
Target:  5'- gACGGAG-CGguggggCC-CGGGCGgcaGCAGGUCg -3'
miRNA:   3'- -UGCCUCaGCa-----GGaGCUUGC---UGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 37365 0.71 0.750311
Target:  5'- -aGGuAGUCGaagCUCGGGCG-CAGGCCg -3'
miRNA:   3'- ugCC-UCAGCag-GAGCUUGCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 37775 0.69 0.867954
Target:  5'- aGCGGccGUCGUCgUCGGcCG-CAGGCg -3'
miRNA:   3'- -UGCCu-CAGCAGgAGCUuGCuGUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.