miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 3' -55.9 NC_002794.1 + 38581 0.84 0.189241
Target:  5'- gACGGAGUCGgccgCCUccuccCGGACGAgAGGCCg -3'
miRNA:   3'- -UGCCUCAGCa---GGA-----GCUUGCUgUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 39051 0.66 0.957227
Target:  5'- gGCGGgcaccacgugaaccAGUCGUCCcgCGAcaucgccuacauggGCGACAG-CCu -3'
miRNA:   3'- -UGCC--------------UCAGCAGGa-GCU--------------UGCUGUCcGG- -5'
10963 3' -55.9 NC_002794.1 + 41182 0.68 0.88868
Target:  5'- cGCGGAGgccgagCGUCgUCGucACGGCGcugcugccaccGGCCu -3'
miRNA:   3'- -UGCCUCa-----GCAGgAGCu-UGCUGU-----------CCGG- -5'
10963 3' -55.9 NC_002794.1 + 41701 0.69 0.837556
Target:  5'- cCGGA-UCGUCC-CGGGCGcGCAGGUa -3'
miRNA:   3'- uGCCUcAGCAGGaGCUUGC-UGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 42163 0.66 0.943612
Target:  5'- gACGGAGaacgucUCGUCCgucucCGccACGAUcGGCCg -3'
miRNA:   3'- -UGCCUC------AGCAGGa----GCu-UGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 42463 0.67 0.939125
Target:  5'- cAUGGcGUCGUCCaugUCGcGCGcGCcgGGGCCg -3'
miRNA:   3'- -UGCCuCAGCAGG---AGCuUGC-UG--UCCGG- -5'
10963 3' -55.9 NC_002794.1 + 42643 0.69 0.837556
Target:  5'- aGCGGAGUCGcggCCgaagcCGACGGcGCCg -3'
miRNA:   3'- -UGCCUCAGCa--GGagcuuGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 43026 0.71 0.740914
Target:  5'- -aGGucGUCGgccUCCaUCGcGCGGCAGGCCg -3'
miRNA:   3'- ugCCu-CAGC---AGG-AGCuUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 44177 0.67 0.92948
Target:  5'- aGCGGcGGcUCGUCgaCUcCGGGCGAagcCGGGCCg -3'
miRNA:   3'- -UGCC-UC-AGCAG--GA-GCUUGCU---GUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 44279 0.67 0.913327
Target:  5'- gACGGAGgaGUCCgCGccCGcCGGGCCg -3'
miRNA:   3'- -UGCCUCagCAGGaGCuuGCuGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 44539 0.69 0.867954
Target:  5'- cGCGccGUCGUCgUCGccGGCGGCGGcGCCc -3'
miRNA:   3'- -UGCcuCAGCAGgAGC--UUGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 47641 0.7 0.821278
Target:  5'- aACGGcacguGGUCGUCC-CGAACGAUcggacaguGGUCg -3'
miRNA:   3'- -UGCC-----UCAGCAGGaGCUUGCUGu-------CCGG- -5'
10963 3' -55.9 NC_002794.1 + 49136 0.68 0.907495
Target:  5'- cCGGAGgUCGUUgUCGAccCGaaaccaGCGGGCCg -3'
miRNA:   3'- uGCCUC-AGCAGgAGCUu-GC------UGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 53206 0.75 0.568252
Target:  5'- cCGGAcucGUCGUCgUCGAGCGGCGaaacgguccguccucGGCCc -3'
miRNA:   3'- uGCCU---CAGCAGgAGCUUGCUGU---------------CCGG- -5'
10963 3' -55.9 NC_002794.1 + 53902 0.68 0.881979
Target:  5'- cCGGcGG-CGUCCUCGucgccguCGGCGGcGCCg -3'
miRNA:   3'- uGCC-UCaGCAGGAGCuu-----GCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 55342 0.67 0.918936
Target:  5'- cCGGGGUCGcgCC-CGAgGCGGCcgaggcGGCCg -3'
miRNA:   3'- uGCCUCAGCa-GGaGCU-UGCUGu-----CCGG- -5'
10963 3' -55.9 NC_002794.1 + 65235 0.67 0.924321
Target:  5'- gGCGGcGGUCGccgcggcggcgaUCCggccucgcCGAGCGGCGGcGCCu -3'
miRNA:   3'- -UGCC-UCAGC------------AGGa-------GCUUGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 65295 0.78 0.408537
Target:  5'- uCGGcGUCGUCCUCGAGaCGACAGcaccaacuccGCCu -3'
miRNA:   3'- uGCCuCAGCAGGAGCUU-GCUGUC----------CGG- -5'
10963 3' -55.9 NC_002794.1 + 65948 0.67 0.92948
Target:  5'- gGCGGuaUCGUCg-CGAGCGGCGGcGUCu -3'
miRNA:   3'- -UGCCucAGCAGgaGCUUGCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 66025 0.68 0.881979
Target:  5'- cGCGGucgucgccGUCGUCgUCGGGcCGGCAgcggcGGCCu -3'
miRNA:   3'- -UGCCu-------CAGCAGgAGCUU-GCUGU-----CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.