miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 3' -55.9 NC_002794.1 + 195043 0.66 0.947878
Target:  5'- -aGGuGcaUCGUCgUCGu-CGACAGGUCg -3'
miRNA:   3'- ugCCuC--AGCAGgAGCuuGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 192986 0.67 0.939125
Target:  5'- gGCGcGGUCGcCCUCGcccGGCGuguGCAGcGCCa -3'
miRNA:   3'- -UGCcUCAGCaGGAGC---UUGC---UGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 189856 0.67 0.939125
Target:  5'- cGCGGAGccgucggCGUCgUCGccgcCGACcGGCCc -3'
miRNA:   3'- -UGCCUCa------GCAGgAGCuu--GCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 188999 0.67 0.913327
Target:  5'- aGCGGcAGcUC-UCCagGucGCGACAGGCCa -3'
miRNA:   3'- -UGCC-UC-AGcAGGagCu-UGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 188304 0.69 0.850842
Target:  5'- cCGGAcccggcccgucgucGUCGUCCUCGucgccgccgcCGGCGGcGCCg -3'
miRNA:   3'- uGCCU--------------CAGCAGGAGCuu--------GCUGUC-CGG- -5'
10963 3' -55.9 NC_002794.1 + 184699 0.88 0.109395
Target:  5'- gGCGGAggGUCGUCCgucggcucuucCGAGCGACAGGCCa -3'
miRNA:   3'- -UGCCU--CAGCAGGa----------GCUUGCUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 184487 0.67 0.918936
Target:  5'- cGCGGGGcccCGgacgCC-CGGGCGGCgcGGGCCc -3'
miRNA:   3'- -UGCCUCa--GCa---GGaGCUUGCUG--UCCGG- -5'
10963 3' -55.9 NC_002794.1 + 181904 0.66 0.959372
Target:  5'- aGCGcGGGUCGUacaccaCC-CGcGCGAC-GGCCg -3'
miRNA:   3'- -UGC-CUCAGCA------GGaGCuUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 180590 0.71 0.777885
Target:  5'- cACGGcagcAGcUGUCCUCGcGCcGCGGGCCa -3'
miRNA:   3'- -UGCC----UCaGCAGGAGCuUGcUGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 179171 0.67 0.924321
Target:  5'- cGCGacaGGUCGUCC-CGGACcaccGCAGGCa -3'
miRNA:   3'- -UGCc--UCAGCAGGaGCUUGc---UGUCCGg -5'
10963 3' -55.9 NC_002794.1 + 178279 0.74 0.583961
Target:  5'- gACGGGGUCGg--UCGAGCGAC-GGCUc -3'
miRNA:   3'- -UGCCUCAGCaggAGCUUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 177749 0.69 0.868675
Target:  5'- cGCGcGAGUCGaCCggaucuuaggacaagCGGGCGuaugGCGGGCCg -3'
miRNA:   3'- -UGC-CUCAGCaGGa--------------GCUUGC----UGUCCGG- -5'
10963 3' -55.9 NC_002794.1 + 177600 0.77 0.428961
Target:  5'- gGCGGAGccucgggucggucgaUCGcUCCUCG-ACGACgAGGCCg -3'
miRNA:   3'- -UGCCUC---------------AGC-AGGAGCuUGCUG-UCCGG- -5'
10963 3' -55.9 NC_002794.1 + 157833 0.66 0.959372
Target:  5'- gACGGAGUUGaUCCUUcuAGCGGauaauccGGCCa -3'
miRNA:   3'- -UGCCUCAGC-AGGAGc-UUGCUgu-----CCGG- -5'
10963 3' -55.9 NC_002794.1 + 156941 0.72 0.731427
Target:  5'- cCGcGAGUCGgggCCUCGGagAUGAUuGGCCg -3'
miRNA:   3'- uGC-CUCAGCa--GGAGCU--UGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 156382 0.71 0.777885
Target:  5'- cACGGGGUCuUCUUCuaGAGCGGCcGGCg -3'
miRNA:   3'- -UGCCUCAGcAGGAG--CUUGCUGuCCGg -5'
10963 3' -55.9 NC_002794.1 + 156197 0.68 0.881979
Target:  5'- uCGGAGUCG-CCggUCGGAgGGCcGGCg -3'
miRNA:   3'- uGCCUCAGCaGG--AGCUUgCUGuCCGg -5'
10963 3' -55.9 NC_002794.1 + 154325 0.71 0.750311
Target:  5'- aGCGGcgucGGUCGUCC-CGggUGcCGcGGCCg -3'
miRNA:   3'- -UGCC----UCAGCAGGaGCuuGCuGU-CCGG- -5'
10963 3' -55.9 NC_002794.1 + 153057 0.68 0.901442
Target:  5'- gGCGGAcg-GUCCcCGAGCGAC-GGUCg -3'
miRNA:   3'- -UGCCUcagCAGGaGCUUGCUGuCCGG- -5'
10963 3' -55.9 NC_002794.1 + 149671 0.7 0.821278
Target:  5'- aGCGGGGgcgCGUCg-CGcuCGACuGGCCg -3'
miRNA:   3'- -UGCCUCa--GCAGgaGCuuGCUGuCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.