miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 5' -59.2 NC_002794.1 + 113381 0.66 0.824671
Target:  5'- cGGGCCgCCGUCguGCAGGcgcugCAGCAcccGGAg -3'
miRNA:   3'- uUCCGG-GGCAG--CGUCCa----GUUGU---CCUg -5'
10963 5' -59.2 NC_002794.1 + 186878 0.66 0.824671
Target:  5'- cGGGCUCgGcUCGCGGuccggcGUCcGCAGGACc -3'
miRNA:   3'- uUCCGGGgC-AGCGUC------CAGuUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 1816 0.66 0.824671
Target:  5'- cGAGGCaCCCGUCGgCcuuauacgGGGUCcg-GGGGCg -3'
miRNA:   3'- -UUCCG-GGGCAGC-G--------UCCAGuugUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 102562 0.66 0.816298
Target:  5'- -cGGCCCuggugcuguCGUCGguGcuGUCG-CAGGACg -3'
miRNA:   3'- uuCCGGG---------GCAGCguC--CAGUuGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 147017 0.66 0.816298
Target:  5'- -cGGCCgCCGgCGCucGGUCua-AGGACg -3'
miRNA:   3'- uuCCGG-GGCaGCGu-CCAGuugUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 180926 0.66 0.816298
Target:  5'- -cGGCgCCGUCGgAGGUCGgucucgcguccGCGGccGACg -3'
miRNA:   3'- uuCCGgGGCAGCgUCCAGU-----------UGUC--CUG- -5'
10963 5' -59.2 NC_002794.1 + 117935 0.66 0.813755
Target:  5'- cGAGGUCCagGUCGCggacgaaguacagcAGGUUGuACAGGGCc -3'
miRNA:   3'- -UUCCGGGg-CAGCG--------------UCCAGU-UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 40995 0.66 0.807765
Target:  5'- uGAGGUCCgCGUuccCGCAGGaUGGCGGaGACg -3'
miRNA:   3'- -UUCCGGG-GCA---GCGUCCaGUUGUC-CUG- -5'
10963 5' -59.2 NC_002794.1 + 137969 0.66 0.806904
Target:  5'- cGAGGCCCUgggaguuGUCGCcgcagcgcuGGUgCAGCuGGGCg -3'
miRNA:   3'- -UUCCGGGG-------CAGCGu--------CCA-GUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 67557 0.66 0.790253
Target:  5'- cGGGCCgCGcCGCAccaaagccgaccGGUCGGC-GGACu -3'
miRNA:   3'- uUCCGGgGCaGCGU------------CCAGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 36979 0.66 0.790253
Target:  5'- gGAGGaUCgCG-CGCAGGUCGGCGaggcGGACc -3'
miRNA:   3'- -UUCC-GGgGCaGCGUCCAGUUGU----CCUG- -5'
10963 5' -59.2 NC_002794.1 + 87012 0.66 0.781289
Target:  5'- uGGGUUCCGgCGaGGGUCcGCAGGAUc -3'
miRNA:   3'- uUCCGGGGCaGCgUCCAGuUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 187485 0.66 0.781289
Target:  5'- cGGGCCgaggacgaggCCG-CGCAGG-CGGcCAGGGCg -3'
miRNA:   3'- uUCCGG----------GGCaGCGUCCaGUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 86917 0.66 0.781289
Target:  5'- -cGGUgacgCCCGUgGCGGGcaGGCGGGGCg -3'
miRNA:   3'- uuCCG----GGGCAgCGUCCagUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 124393 0.67 0.762987
Target:  5'- -cGGCggCgCGUCGCcGGUCGuCGGGGCg -3'
miRNA:   3'- uuCCG--GgGCAGCGuCCAGUuGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 189503 0.67 0.762987
Target:  5'- uGGGCaccucgugUCCGUCGCGGaUCAGCGGGuGCc -3'
miRNA:   3'- uUCCG--------GGGCAGCGUCcAGUUGUCC-UG- -5'
10963 5' -59.2 NC_002794.1 + 179427 0.67 0.753666
Target:  5'- cGGGCCCCGggCGCGGa--GGCGuGGACc -3'
miRNA:   3'- uUCCGGGGCa-GCGUCcagUUGU-CCUG- -5'
10963 5' -59.2 NC_002794.1 + 47418 0.67 0.752729
Target:  5'- -cGGCgCCGUCGCGcGGagcgccaggcguuUCAggACGGGGCa -3'
miRNA:   3'- uuCCGgGGCAGCGU-CC-------------AGU--UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 96857 0.67 0.744243
Target:  5'- uGAGGCCaCCGUCGUGuccUCGAC-GGACg -3'
miRNA:   3'- -UUCCGG-GGCAGCGUcc-AGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 99625 0.67 0.744243
Target:  5'- -cGGCCCCGUuucUGCAGaUCGugcccCGGGGCu -3'
miRNA:   3'- uuCCGGGGCA---GCGUCcAGUu----GUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.