miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 5' -59.2 NC_002794.1 + 146904 0.68 0.666209
Target:  5'- aAAGGCgCUCGggCGCGGGgaUCGGCcGGACg -3'
miRNA:   3'- -UUCCG-GGGCa-GCGUCC--AGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 140060 0.68 0.666209
Target:  5'- aGGGGCUcaccacauauUCGUCGCGaGcCAGCAGGACg -3'
miRNA:   3'- -UUCCGG----------GGCAGCGUcCaGUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 180860 0.68 0.676142
Target:  5'- -cGGCCUCGUCGgAGG-CGGC-GGAUc -3'
miRNA:   3'- uuCCGGGGCAGCgUCCaGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 29831 0.68 0.68604
Target:  5'- cAGGUCCgGggucgUGCAGGg-GGCAGGACg -3'
miRNA:   3'- uUCCGGGgCa----GCGUCCagUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 54274 0.68 0.695896
Target:  5'- cGGGCCaaaCCGU-GCAGacgCAGCAGGGCg -3'
miRNA:   3'- uUCCGG---GGCAgCGUCca-GUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 20469 0.67 0.72416
Target:  5'- -cGGCCCCGaagacgUGCAcguGGUCAucaucggGCAGGAUc -3'
miRNA:   3'- uuCCGGGGCa-----GCGU---CCAGU-------UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 98397 0.67 0.725125
Target:  5'- -uGGCCaagugCGUCG-AGGUCGAuCAGGAUa -3'
miRNA:   3'- uuCCGGg----GCAGCgUCCAGUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 139353 0.67 0.725125
Target:  5'- cAGGCCCCagacCAGGcaCAGCAGGACc -3'
miRNA:   3'- uUCCGGGGcagcGUCCa-GUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 184489 0.67 0.730895
Target:  5'- cGGGGCCCCGgacgcccgggcggCGCGGGccccgcgcgCGGCGcGGGCg -3'
miRNA:   3'- -UUCCGGGGCa------------GCGUCCa--------GUUGU-CCUG- -5'
10963 5' -59.2 NC_002794.1 + 58063 0.67 0.734726
Target:  5'- -cGGCCCCG--GC-GG-CGGCGGGACg -3'
miRNA:   3'- uuCCGGGGCagCGuCCaGUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 182193 0.67 0.734726
Target:  5'- cGGGGCCUCGgCGcCGGcGUCGcgccACGGGGCu -3'
miRNA:   3'- -UUCCGGGGCaGC-GUC-CAGU----UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 115617 0.67 0.734726
Target:  5'- -cGGCgCCGggagGCGGGUCAGgugguuCAGGGCg -3'
miRNA:   3'- uuCCGgGGCag--CGUCCAGUU------GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 111081 0.67 0.734726
Target:  5'- ---cCCCCGUCGgcaGGGUCGGCGGGcCc -3'
miRNA:   3'- uuccGGGGCAGCg--UCCAGUUGUCCuG- -5'
10963 5' -59.2 NC_002794.1 + 99625 0.67 0.744243
Target:  5'- -cGGCCCCGUuucUGCAGaUCGugcccCGGGGCu -3'
miRNA:   3'- uuCCGGGGCA---GCGUCcAGUu----GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 96857 0.67 0.744243
Target:  5'- uGAGGCCaCCGUCGUGuccUCGAC-GGACg -3'
miRNA:   3'- -UUCCGG-GGCAGCGUcc-AGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 47418 0.67 0.752729
Target:  5'- -cGGCgCCGUCGCGcGGagcgccaggcguuUCAggACGGGGCa -3'
miRNA:   3'- uuCCGgGGCAGCGU-CC-------------AGU--UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 179427 0.67 0.753666
Target:  5'- cGGGCCCCGggCGCGGa--GGCGuGGACc -3'
miRNA:   3'- uUCCGGGGCa-GCGUCcagUUGU-CCUG- -5'
10963 5' -59.2 NC_002794.1 + 189503 0.67 0.762987
Target:  5'- uGGGCaccucgugUCCGUCGCGGaUCAGCGGGuGCc -3'
miRNA:   3'- uUCCG--------GGGCAGCGUCcAGUUGUCC-UG- -5'
10963 5' -59.2 NC_002794.1 + 124393 0.67 0.762987
Target:  5'- -cGGCggCgCGUCGCcGGUCGuCGGGGCg -3'
miRNA:   3'- uuCCG--GgGCAGCGuCCAGUuGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 87012 0.66 0.781289
Target:  5'- uGGGUUCCGgCGaGGGUCcGCAGGAUc -3'
miRNA:   3'- uUCCGGGGCaGCgUCCAGuUGUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.