miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 5' -59.2 NC_002794.1 + 58063 0.67 0.734726
Target:  5'- -cGGCCCCG--GC-GG-CGGCGGGACg -3'
miRNA:   3'- uuCCGGGGCagCGuCCaGUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 115617 0.67 0.734726
Target:  5'- -cGGCgCCGggagGCGGGUCAGgugguuCAGGGCg -3'
miRNA:   3'- uuCCGgGGCag--CGUCCAGUU------GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 111081 0.67 0.734726
Target:  5'- ---cCCCCGUCGgcaGGGUCGGCGGGcCc -3'
miRNA:   3'- uuccGGGGCAGCg--UCCAGUUGUCCuG- -5'
10963 5' -59.2 NC_002794.1 + 182193 0.67 0.734726
Target:  5'- cGGGGCCUCGgCGcCGGcGUCGcgccACGGGGCu -3'
miRNA:   3'- -UUCCGGGGCaGC-GUC-CAGU----UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 184489 0.67 0.730895
Target:  5'- cGGGGCCCCGgacgcccgggcggCGCGGGccccgcgcgCGGCGcGGGCg -3'
miRNA:   3'- -UUCCGGGGCa------------GCGUCCa--------GUUGU-CCUG- -5'
10963 5' -59.2 NC_002794.1 + 98397 0.67 0.725125
Target:  5'- -uGGCCaagugCGUCG-AGGUCGAuCAGGAUa -3'
miRNA:   3'- uuCCGGg----GCAGCgUCCAGUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 139353 0.67 0.725125
Target:  5'- cAGGCCCCagacCAGGcaCAGCAGGACc -3'
miRNA:   3'- uUCCGGGGcagcGUCCa-GUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 20469 0.67 0.72416
Target:  5'- -cGGCCCCGaagacgUGCAcguGGUCAucaucggGCAGGAUc -3'
miRNA:   3'- uuCCGGGGCa-----GCGU---CCAGU-------UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 54274 0.68 0.695896
Target:  5'- cGGGCCaaaCCGU-GCAGacgCAGCAGGGCg -3'
miRNA:   3'- uUCCGG---GGCAgCGUCca-GUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 29831 0.68 0.68604
Target:  5'- cAGGUCCgGggucgUGCAGGg-GGCAGGACg -3'
miRNA:   3'- uUCCGGGgCa----GCGUCCagUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 180860 0.68 0.676142
Target:  5'- -cGGCCUCGUCGgAGG-CGGC-GGAUc -3'
miRNA:   3'- uuCCGGGGCAGCgUCCaGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 45446 0.68 0.666209
Target:  5'- -cGGaCCCgGUCGCGcGUCAGCGGGcCc -3'
miRNA:   3'- uuCC-GGGgCAGCGUcCAGUUGUCCuG- -5'
10963 5' -59.2 NC_002794.1 + 140060 0.68 0.666209
Target:  5'- aGGGGCUcaccacauauUCGUCGCGaGcCAGCAGGACg -3'
miRNA:   3'- -UUCCGG----------GGCAGCGUcCaGUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 146904 0.68 0.666209
Target:  5'- aAAGGCgCUCGggCGCGGGgaUCGGCcGGACg -3'
miRNA:   3'- -UUCCG-GGGCa-GCGUCC--AGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 44632 0.69 0.65625
Target:  5'- cGGGCUCCGUguccgcCGCAggauguucGGUCGACAGGuCc -3'
miRNA:   3'- uUCCGGGGCA------GCGU--------CCAGUUGUCCuG- -5'
10963 5' -59.2 NC_002794.1 + 105780 0.69 0.65625
Target:  5'- uGGGCCgCGUCGaUAGGUCGgucuCGGaGACg -3'
miRNA:   3'- uUCCGGgGCAGC-GUCCAGUu---GUC-CUG- -5'
10963 5' -59.2 NC_002794.1 + 101033 0.69 0.645274
Target:  5'- cGGGCCggG-CGCGGGUCGgccgcuacugcguGCAGGACg -3'
miRNA:   3'- uUCCGGggCaGCGUCCAGU-------------UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 21900 0.69 0.626294
Target:  5'- -cGGCCUgCGUCGguGGUggCGGCGGaGACg -3'
miRNA:   3'- uuCCGGG-GCAGCguCCA--GUUGUC-CUG- -5'
10963 5' -59.2 NC_002794.1 + 112089 0.69 0.626294
Target:  5'- cAGGUCCCGUUGCgcguccAGGcgCGGcCGGGACg -3'
miRNA:   3'- uUCCGGGGCAGCG------UCCa-GUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 77189 0.69 0.606331
Target:  5'- aAGGGUccuccuccgccgCCCGUCGCAGGUgcgcuugcaCAACcGGACc -3'
miRNA:   3'- -UUCCG------------GGGCAGCGUCCA---------GUUGuCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.