miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 5' -59.2 NC_002794.1 + 87012 0.66 0.781289
Target:  5'- uGGGUUCCGgCGaGGGUCcGCAGGAUc -3'
miRNA:   3'- uUCCGGGGCaGCgUCCAGuUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 96857 0.67 0.744243
Target:  5'- uGAGGCCaCCGUCGUGuccUCGAC-GGACg -3'
miRNA:   3'- -UUCCGG-GGCAGCGUcc-AGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 98397 0.67 0.725125
Target:  5'- -uGGCCaagugCGUCG-AGGUCGAuCAGGAUa -3'
miRNA:   3'- uuCCGGg----GCAGCgUCCAGUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 99625 0.67 0.744243
Target:  5'- -cGGCCCCGUuucUGCAGaUCGugcccCGGGGCu -3'
miRNA:   3'- uuCCGGGGCA---GCGUCcAGUu----GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 101033 0.69 0.645274
Target:  5'- cGGGCCggG-CGCGGGUCGgccgcuacugcguGCAGGACg -3'
miRNA:   3'- uUCCGGggCaGCGUCCAGU-------------UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 102562 0.66 0.816298
Target:  5'- -cGGCCCuggugcuguCGUCGguGcuGUCG-CAGGACg -3'
miRNA:   3'- uuCCGGG---------GCAGCguC--CAGUuGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 105780 0.69 0.65625
Target:  5'- uGGGCCgCGUCGaUAGGUCGgucuCGGaGACg -3'
miRNA:   3'- uUCCGGgGCAGC-GUCCAGUu---GUC-CUG- -5'
10963 5' -59.2 NC_002794.1 + 111081 0.67 0.734726
Target:  5'- ---cCCCCGUCGgcaGGGUCGGCGGGcCc -3'
miRNA:   3'- uuccGGGGCAGCg--UCCAGUUGUCCuG- -5'
10963 5' -59.2 NC_002794.1 + 112089 0.69 0.626294
Target:  5'- cAGGUCCCGUUGCgcguccAGGcgCGGcCGGGACg -3'
miRNA:   3'- uUCCGGGGCAGCG------UCCa-GUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 113381 0.66 0.824671
Target:  5'- cGGGCCgCCGUCguGCAGGcgcugCAGCAcccGGAg -3'
miRNA:   3'- uUCCGG-GGCAG--CGUCCa----GUUGU---CCUg -5'
10963 5' -59.2 NC_002794.1 + 115617 0.67 0.734726
Target:  5'- -cGGCgCCGggagGCGGGUCAGgugguuCAGGGCg -3'
miRNA:   3'- uuCCGgGGCag--CGUCCAGUU------GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 116810 0.7 0.566678
Target:  5'- cGGGCgCCGUagCGCGGGUCGcucugguccCGGGACg -3'
miRNA:   3'- uUCCGgGGCA--GCGUCCAGUu--------GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 116867 0.7 0.596374
Target:  5'- -cGGCCgUGUCGCGcucGUCAGgGGGGCg -3'
miRNA:   3'- uuCCGGgGCAGCGUc--CAGUUgUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 117935 0.66 0.813755
Target:  5'- cGAGGUCCagGUCGCggacgaaguacagcAGGUUGuACAGGGCc -3'
miRNA:   3'- -UUCCGGGg-CAGCG--------------UCCAGU-UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 124393 0.67 0.762987
Target:  5'- -cGGCggCgCGUCGCcGGUCGuCGGGGCg -3'
miRNA:   3'- uuCCG--GgGCAGCGuCCAGUuGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 130004 0.73 0.40964
Target:  5'- -cGGCCCCGgagcgUGCGGGUCGGCcucgcgcgAGGAg -3'
miRNA:   3'- uuCCGGGGCa----GCGUCCAGUUG--------UCCUg -5'
10963 5' -59.2 NC_002794.1 + 137969 0.66 0.806904
Target:  5'- cGAGGCCCUgggaguuGUCGCcgcagcgcuGGUgCAGCuGGGCg -3'
miRNA:   3'- -UUCCGGGG-------CAGCGu--------CCA-GUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 139353 0.67 0.725125
Target:  5'- cAGGCCCCagacCAGGcaCAGCAGGACc -3'
miRNA:   3'- uUCCGGGGcagcGUCCa-GUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 140022 0.71 0.518131
Target:  5'- gGAGGCCgCGgccccCGCGGG-CGGCGGGAg -3'
miRNA:   3'- -UUCCGGgGCa----GCGUCCaGUUGUCCUg -5'
10963 5' -59.2 NC_002794.1 + 140060 0.68 0.666209
Target:  5'- aGGGGCUcaccacauauUCGUCGCGaGcCAGCAGGACg -3'
miRNA:   3'- -UUCCGG----------GGCAGCGUcCaGUUGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.