miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10963 5' -59.2 NC_002794.1 + 189503 0.67 0.762987
Target:  5'- uGGGCaccucgugUCCGUCGCGGaUCAGCGGGuGCc -3'
miRNA:   3'- uUCCG--------GGGCAGCGUCcAGUUGUCC-UG- -5'
10963 5' -59.2 NC_002794.1 + 188521 0.71 0.48887
Target:  5'- aAAGGCCCCGaucucgaagCGCAGGUgucgcggCGGCGGGuACu -3'
miRNA:   3'- -UUCCGGGGCa--------GCGUCCA-------GUUGUCC-UG- -5'
10963 5' -59.2 NC_002794.1 + 187485 0.66 0.781289
Target:  5'- cGGGCCgaggacgaggCCG-CGCAGG-CGGcCAGGGCg -3'
miRNA:   3'- uUCCGG----------GGCaGCGUCCaGUU-GUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 186878 0.66 0.824671
Target:  5'- cGGGCUCgGcUCGCGGuccggcGUCcGCAGGACc -3'
miRNA:   3'- uUCCGGGgC-AGCGUC------CAGuUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 184489 0.67 0.730895
Target:  5'- cGGGGCCCCGgacgcccgggcggCGCGGGccccgcgcgCGGCGcGGGCg -3'
miRNA:   3'- -UUCCGGGGCa------------GCGUCCa--------GUUGU-CCUG- -5'
10963 5' -59.2 NC_002794.1 + 182193 0.67 0.734726
Target:  5'- cGGGGCCUCGgCGcCGGcGUCGcgccACGGGGCu -3'
miRNA:   3'- -UUCCGGGGCaGC-GUC-CAGU----UGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 180926 0.66 0.816298
Target:  5'- -cGGCgCCGUCGgAGGUCGgucucgcguccGCGGccGACg -3'
miRNA:   3'- uuCCGgGGCAGCgUCCAGU-----------UGUC--CUG- -5'
10963 5' -59.2 NC_002794.1 + 180860 0.68 0.676142
Target:  5'- -cGGCCUCGUCGgAGG-CGGC-GGAUc -3'
miRNA:   3'- uuCCGGGGCAGCgUCCaGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 179427 0.67 0.753666
Target:  5'- cGGGCCCCGggCGCGGa--GGCGuGGACc -3'
miRNA:   3'- uUCCGGGGCa-GCGUCcagUUGU-CCUG- -5'
10963 5' -59.2 NC_002794.1 + 155779 0.7 0.546115
Target:  5'- cAGGCaCCGUaucaGCAGGUUcagaugcgauuguGACAGGACg -3'
miRNA:   3'- uUCCGgGGCAg---CGUCCAG-------------UUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 147148 0.7 0.556859
Target:  5'- -cGGCCCCGgggcCGCgaGGGcCAGCuGGACc -3'
miRNA:   3'- uuCCGGGGCa---GCG--UCCaGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 147017 0.66 0.816298
Target:  5'- -cGGCCgCCGgCGCucGGUCua-AGGACg -3'
miRNA:   3'- uuCCGG-GGCaGCGu-CCAGuugUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 146904 0.68 0.666209
Target:  5'- aAAGGCgCUCGggCGCGGGgaUCGGCcGGACg -3'
miRNA:   3'- -UUCCG-GGGCa-GCGUCC--AGUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 140060 0.68 0.666209
Target:  5'- aGGGGCUcaccacauauUCGUCGCGaGcCAGCAGGACg -3'
miRNA:   3'- -UUCCGG----------GGCAGCGUcCaGUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 140022 0.71 0.518131
Target:  5'- gGAGGCCgCGgccccCGCGGG-CGGCGGGAg -3'
miRNA:   3'- -UUCCGGgGCa----GCGUCCaGUUGUCCUg -5'
10963 5' -59.2 NC_002794.1 + 139353 0.67 0.725125
Target:  5'- cAGGCCCCagacCAGGcaCAGCAGGACc -3'
miRNA:   3'- uUCCGGGGcagcGUCCa-GUUGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 137969 0.66 0.806904
Target:  5'- cGAGGCCCUgggaguuGUCGCcgcagcgcuGGUgCAGCuGGGCg -3'
miRNA:   3'- -UUCCGGGG-------CAGCGu--------CCA-GUUGuCCUG- -5'
10963 5' -59.2 NC_002794.1 + 130004 0.73 0.40964
Target:  5'- -cGGCCCCGgagcgUGCGGGUCGGCcucgcgcgAGGAg -3'
miRNA:   3'- uuCCGGGGCa----GCGUCCAGUUG--------UCCUg -5'
10963 5' -59.2 NC_002794.1 + 124393 0.67 0.762987
Target:  5'- -cGGCggCgCGUCGCcGGUCGuCGGGGCg -3'
miRNA:   3'- uuCCG--GgGCAGCGuCCAGUuGUCCUG- -5'
10963 5' -59.2 NC_002794.1 + 117935 0.66 0.813755
Target:  5'- cGAGGUCCagGUCGCggacgaaguacagcAGGUUGuACAGGGCc -3'
miRNA:   3'- -UUCCGGGg-CAGCG--------------UCCAGU-UGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.