miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 10729 0.66 0.997304
Target:  5'- -gACGCGCucacCGAcCGcuuacaggugugccaACGAGACGACGg -3'
miRNA:   3'- gaUGUGCGu---GCU-GC---------------UGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 184074 0.66 0.997122
Target:  5'- -gGCACGCGCccacgguguaGCGGCAGaACGGCGa -3'
miRNA:   3'- gaUGUGCGUGc---------UGCUGUUcUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 83689 0.66 0.997122
Target:  5'- -aGCACGCcuGCGACGACGgccucugccAGAucCGACu- -3'
miRNA:   3'- gaUGUGCG--UGCUGCUGU---------UCU--GCUGca -5'
10964 3' -51.6 NC_002794.1 + 80809 0.66 0.997122
Target:  5'- cCUcCACGCcCGGCGugAgcucuuccccgAGGCGGCGc -3'
miRNA:   3'- -GAuGUGCGuGCUGCugU-----------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 69506 0.66 0.997122
Target:  5'- -cACGCGCACGGu--CAGGuACGGCGc -3'
miRNA:   3'- gaUGUGCGUGCUgcuGUUC-UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 147675 0.66 0.997122
Target:  5'- cCUGCucGCGCuCGAgGACccGGCGGCGa -3'
miRNA:   3'- -GAUG--UGCGuGCUgCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 63484 0.66 0.997122
Target:  5'- -gGC-CGCcguCGACGACGccGCGGCGUc -3'
miRNA:   3'- gaUGuGCGu--GCUGCUGUucUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 185441 0.66 0.997122
Target:  5'- --cCAUGCGCGgacaggucuccGCGACAaacgccgcGGGCGGCGg -3'
miRNA:   3'- gauGUGCGUGC-----------UGCUGU--------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 13075 0.66 0.997122
Target:  5'- -gGC-CGCGCGAcCGGCGcgaagucccgggGGACGAgGUg -3'
miRNA:   3'- gaUGuGCGUGCU-GCUGU------------UCUGCUgCA- -5'
10964 3' -51.6 NC_002794.1 + 84407 0.66 0.996828
Target:  5'- -gACgACGC-CGACGACGccaucuccaucgacGGCGACGUg -3'
miRNA:   3'- gaUG-UGCGuGCUGCUGUu-------------CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 49014 0.66 0.996619
Target:  5'- -cGCGC-CGCGGCGGCc--GCGGCGUc -3'
miRNA:   3'- gaUGUGcGUGCUGCUGuucUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 100371 0.66 0.996619
Target:  5'- aCUGCgagguggccgACGUccGCGGCGu--GGACGACGUg -3'
miRNA:   3'- -GAUG----------UGCG--UGCUGCuguUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 118251 0.66 0.996619
Target:  5'- -gGCGgGCugGAgguCGGcCGGGGCGGCGg -3'
miRNA:   3'- gaUGUgCGugCU---GCU-GUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 112743 0.66 0.996619
Target:  5'- -gGCGCGgugcucCGCGGCGGCGGGGuCGGgGUg -3'
miRNA:   3'- gaUGUGC------GUGCUGCUGUUCU-GCUgCA- -5'
10964 3' -51.6 NC_002794.1 + 36950 0.66 0.996619
Target:  5'- -cGCGuCGCGCGGCGGCAGGcaguCG-CGc -3'
miRNA:   3'- gaUGU-GCGUGCUGCUGUUCu---GCuGCa -5'
10964 3' -51.6 NC_002794.1 + 185617 0.66 0.996619
Target:  5'- -aACACccgaGCGACGGCGAGcgagacucgaGCGGCGg -3'
miRNA:   3'- gaUGUGcg--UGCUGCUGUUC----------UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 120630 0.66 0.996619
Target:  5'- aCUAuCugGCccucgAUGACGACGAGA-GGCGg -3'
miRNA:   3'- -GAU-GugCG-----UGCUGCUGUUCUgCUGCa -5'
10964 3' -51.6 NC_002794.1 + 128585 0.66 0.996619
Target:  5'- gUACACGUuCG-CGACccuGAGGCGGCa- -3'
miRNA:   3'- gAUGUGCGuGCuGCUG---UUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 166238 0.66 0.996619
Target:  5'- --cCGCGaCAUGACGugGaaguguguGGGCGGCGg -3'
miRNA:   3'- gauGUGC-GUGCUGCugU--------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 46314 0.66 0.996565
Target:  5'- -aGCGCG-GCGGCGACGgcgccgucgccgcGGACGGCu- -3'
miRNA:   3'- gaUGUGCgUGCUGCUGU-------------UCUGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.