miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 117666 0.67 0.989979
Target:  5'- --cCACGCGCGGCGGCGcguacugcacguAggccucgcacgccgcGACGGCGUg -3'
miRNA:   3'- gauGUGCGUGCUGCUGU------------U---------------CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 84042 0.67 0.989454
Target:  5'- -gGCACgaacgGCACGACGcCGccucccagccggAGACGACGa -3'
miRNA:   3'- gaUGUG-----CGUGCUGCuGU------------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64743 0.67 0.992812
Target:  5'- -cACGgGCAccgaaggaccCGACGACGucuuucgGGACGACGa -3'
miRNA:   3'- gaUGUgCGU----------GCUGCUGU-------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 56300 0.67 0.992812
Target:  5'- aUGCGCGCGCGgucgcggucgcugGCGGCcguggccGGCGACGc -3'
miRNA:   3'- gAUGUGCGUGC-------------UGCUGuu-----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 185554 0.67 0.993837
Target:  5'- -gGC-CGCGCGccccgcccugccGCGGCAGGGCGcGCGg -3'
miRNA:   3'- gaUGuGCGUGC------------UGCUGUUCUGC-UGCa -5'
10964 3' -51.6 NC_002794.1 + 35856 0.67 0.993837
Target:  5'- --cCGCGCGacCGACGACGAGAgaACGa -3'
miRNA:   3'- gauGUGCGU--GCUGCUGUUCUgcUGCa -5'
10964 3' -51.6 NC_002794.1 + 84138 0.67 0.993837
Target:  5'- -cGCACGCG-GAC-ACGAGcGCGACGg -3'
miRNA:   3'- gaUGUGCGUgCUGcUGUUC-UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 92494 0.67 0.993837
Target:  5'- -----gGUGCGugGACGAGGCGGCc- -3'
miRNA:   3'- gaugugCGUGCugCUGUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 178429 0.67 0.993837
Target:  5'- -gAC-CGCGCGACGGgCGGuGACGcCGUg -3'
miRNA:   3'- gaUGuGCGUGCUGCU-GUU-CUGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 48938 0.67 0.993837
Target:  5'- -cAgGCGCuCGGCGACcucuucgcAGACGGCGa -3'
miRNA:   3'- gaUgUGCGuGCUGCUGu-------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 150648 0.67 0.993837
Target:  5'- -gGCACGCGCGuCGACcuGGGCuGGCc- -3'
miRNA:   3'- gaUGUGCGUGCuGCUGu-UCUG-CUGca -5'
10964 3' -51.6 NC_002794.1 + 58935 0.67 0.993837
Target:  5'- cCUGCACGCcauggACGAgGACGAGcCGcucuuCGUg -3'
miRNA:   3'- -GAUGUGCG-----UGCUgCUGUUCuGCu----GCA- -5'
10964 3' -51.6 NC_002794.1 + 32256 0.67 0.993837
Target:  5'- gCUGCugGCGCucGACGGCcGGccgauCGGCGa -3'
miRNA:   3'- -GAUGugCGUG--CUGCUGuUCu----GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 128277 0.67 0.993749
Target:  5'- -aGCGCGgAgcCGACGGCcgucuucgacaccGAGACGGCGa -3'
miRNA:   3'- gaUGUGCgU--GCUGCUG-------------UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 79439 0.67 0.993749
Target:  5'- -gGCG-GCgGCGGCGACcggcgcgGAGACGACGa -3'
miRNA:   3'- gaUGUgCG-UGCUGCUG-------UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 35562 0.67 0.992911
Target:  5'- -cGCGCGCGCGugGugGcccaGGCGUu -3'
miRNA:   3'- gaUGUGCGUGCugCugUucugCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 184483 0.67 0.992911
Target:  5'- -gGCGCGCGgGGCcccgGACGcccGGGCGGCGc -3'
miRNA:   3'- gaUGUGCGUgCUG----CUGU---UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 18700 0.67 0.992911
Target:  5'- -gGCACG-GCGGCGGCGguccGGACGuCGg -3'
miRNA:   3'- gaUGUGCgUGCUGCUGU----UCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 183068 0.67 0.992911
Target:  5'- gCU-CGCGCugGACGggaACGAGAgCGAgGUc -3'
miRNA:   3'- -GAuGUGCGugCUGC---UGUUCU-GCUgCA- -5'
10964 3' -51.6 NC_002794.1 + 144451 0.67 0.992911
Target:  5'- gUGCGCGCACcugcGCGACugccCGACGUu -3'
miRNA:   3'- gAUGUGCGUGc---UGCUGuucuGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.