miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 106971 0.71 0.941192
Target:  5'- -cGCcuCGCGCGGCGGCcGGcACGGCGg -3'
miRNA:   3'- gaUGu-GCGUGCUGCUGuUC-UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 16781 0.71 0.941192
Target:  5'- -gGCACGCGcCGACGcCAAaucgccGACGACGc -3'
miRNA:   3'- gaUGUGCGU-GCUGCuGUU------CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 129916 0.71 0.925639
Target:  5'- -aGCACGCGauucgccaggccgUGGCGACGGcGGCGGCGg -3'
miRNA:   3'- gaUGUGCGU-------------GCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 179198 0.71 0.931422
Target:  5'- -gGCACGCcccggcCGGCGGCAcGACgGACGUg -3'
miRNA:   3'- gaUGUGCGu-----GCUGCUGUuCUG-CUGCA- -5'
10964 3' -51.6 NC_002794.1 + 76675 0.71 0.926177
Target:  5'- -aACACGC-CGACGGCGcAGGCGAa-- -3'
miRNA:   3'- gaUGUGCGuGCUGCUGU-UCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 157331 0.71 0.920692
Target:  5'- -gACGCGCGucCGGuCGACcGGACGACGc -3'
miRNA:   3'- gaUGUGCGU--GCU-GCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 44159 0.71 0.920692
Target:  5'- gUGCACguGCACGGCG-CGAG-CGGCGg -3'
miRNA:   3'- gAUGUG--CGUGCUGCuGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 184520 0.71 0.931422
Target:  5'- --cCGCGCGCGGCG-CG-GGCGACGc -3'
miRNA:   3'- gauGUGCGUGCUGCuGUuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 42219 0.71 0.920692
Target:  5'- uCUGC-CGCugGAUcagccGCGAGACGGCGg -3'
miRNA:   3'- -GAUGuGCGugCUGc----UGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 34747 0.71 0.931422
Target:  5'- ---aGCGCGCGACGGCGcggugGGACG-CGg -3'
miRNA:   3'- gaugUGCGUGCUGCUGU-----UCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 31080 0.71 0.931422
Target:  5'- -aGCACGUcgaGCGugGcgaAAGGCGACGUg -3'
miRNA:   3'- gaUGUGCG---UGCugCug-UUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 18245 0.7 0.94572
Target:  5'- -aGCGCGCGCGGcCGACc-GGCGACc- -3'
miRNA:   3'- gaUGUGCGUGCU-GCUGuuCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 112336 0.7 0.957905
Target:  5'- -aGCGCGCcggcCGGCGGCGccGGCGGCGg -3'
miRNA:   3'- gaUGUGCGu---GCUGCUGUu-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 98365 0.7 0.957905
Target:  5'- -cGC-CGCGCGGCuGGCGGGA-GACGUg -3'
miRNA:   3'- gaUGuGCGUGCUG-CUGUUCUgCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 78378 0.7 0.957905
Target:  5'- cCUGCucCGCcaGCGACGGC--GACGACGa -3'
miRNA:   3'- -GAUGu-GCG--UGCUGCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 58834 0.7 0.961512
Target:  5'- cCUGC-CGCGCGAgGACGc--CGACGUg -3'
miRNA:   3'- -GAUGuGCGUGCUgCUGUucuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 95756 0.7 0.961512
Target:  5'- gUACuCGCGgGGCGGCGGccgcGACGGCGg -3'
miRNA:   3'- gAUGuGCGUgCUGCUGUU----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 115925 0.7 0.961512
Target:  5'- --cUugGCGCGGCGGCGGGcCGGCc- -3'
miRNA:   3'- gauGugCGUGCUGCUGUUCuGCUGca -5'
10964 3' -51.6 NC_002794.1 + 112098 0.7 0.94572
Target:  5'- uUGCGCGUccagGCG-CGGcCGGGACGACGg -3'
miRNA:   3'- gAUGUGCG----UGCuGCU-GUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 102514 0.7 0.94572
Target:  5'- -gGCugGCGCG-CGcGCGGGACGACc- -3'
miRNA:   3'- gaUGugCGUGCuGC-UGUUCUGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.