miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 120121 0.8 0.524332
Target:  5'- -gACGCGCGCGACGGCGAccGGgGACGg -3'
miRNA:   3'- gaUGUGCGUGCUGCUGUU--CUgCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64705 0.77 0.676623
Target:  5'- -aGCGCGgACGAgGACGAcGACGACGa -3'
miRNA:   3'- gaUGUGCgUGCUgCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 92285 0.77 0.696898
Target:  5'- -gGCGCGCAagguCGGCGACGAGGCGGgGc -3'
miRNA:   3'- gaUGUGCGU----GCUGCUGUUCUGCUgCa -5'
10964 3' -51.6 NC_002794.1 + 8756 0.76 0.706959
Target:  5'- -gGCGuguCGCgACGGCGugAAGACGGCGUg -3'
miRNA:   3'- gaUGU---GCG-UGCUGCugUUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 63683 0.76 0.716956
Target:  5'- -gGC-CGCgGCGACGACGAuGACGACGa -3'
miRNA:   3'- gaUGuGCG-UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 121722 0.76 0.72688
Target:  5'- -cACGCGgACGACGAC--GACGACGa -3'
miRNA:   3'- gaUGUGCgUGCUGCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 53264 0.75 0.756122
Target:  5'- -cGC-CGCGCGACaACGGGGCGGCGa -3'
miRNA:   3'- gaUGuGCGUGCUGcUGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 91208 0.75 0.765662
Target:  5'- --uCGCGgACGGCGACGcGACGGCGg -3'
miRNA:   3'- gauGUGCgUGCUGCUGUuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 63452 0.75 0.775083
Target:  5'- -gGC-CGCgGCGGCGACGAuGACGACGa -3'
miRNA:   3'- gaUGuGCG-UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 62476 0.75 0.79353
Target:  5'- -gGCGCGCcuCGACGagcGCGAGugGACGg -3'
miRNA:   3'- gaUGUGCGu-GCUGC---UGUUCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 107226 0.75 0.802539
Target:  5'- -gGCgGCGCGCGACGG--GGGCGGCGUc -3'
miRNA:   3'- gaUG-UGCGUGCUGCUguUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 266 0.74 0.811392
Target:  5'- -cGCGCGCGCgGACGcgAGGACGGCGg -3'
miRNA:   3'- gaUGUGCGUG-CUGCugUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 154207 0.74 0.820082
Target:  5'- -gAgACGCugGcGCGGCAAGGCGugGa -3'
miRNA:   3'- gaUgUGCGugC-UGCUGUUCUGCugCa -5'
10964 3' -51.6 NC_002794.1 + 94445 0.74 0.827757
Target:  5'- cCUACgGCGCggaggagucggugGCGACGGCAAcGGCGGCGg -3'
miRNA:   3'- -GAUG-UGCG-------------UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 11249 0.74 0.828601
Target:  5'- gCUGCACGUACGAgGGgucGGGCGACGc -3'
miRNA:   3'- -GAUGUGCGUGCUgCUgu-UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 106318 0.74 0.828601
Target:  5'- -aGCGCGaCGCGcGCGACGGGuCGACGg -3'
miRNA:   3'- gaUGUGC-GUGC-UGCUGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 58979 0.74 0.83694
Target:  5'- -aGCGCcuGCGCGACGACGAGcUGGCGc -3'
miRNA:   3'- gaUGUG--CGUGCUGCUGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 62072 0.74 0.83694
Target:  5'- -gGCgACGCcgGCGGCGACGAcGGCGACGc -3'
miRNA:   3'- gaUG-UGCG--UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64833 0.74 0.845092
Target:  5'- ---gGCGC-CGACGACcGGACGGCGc -3'
miRNA:   3'- gaugUGCGuGCUGCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 139111 0.73 0.853049
Target:  5'- -gGCACGaCGCgGGCGAUcacgGAGACGGCGUc -3'
miRNA:   3'- gaUGUGC-GUG-CUGCUG----UUCUGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.