miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 44324 0.73 0.853049
Target:  5'- -cGCGaGCGCGGCGGCGaagaAGACGGCGc -3'
miRNA:   3'- gaUGUgCGUGCUGCUGU----UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 128444 0.73 0.853049
Target:  5'- -cGCGCGCACGGCGccuccggagccCAGGACGACc- -3'
miRNA:   3'- gaUGUGCGUGCUGCu----------GUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 19452 0.73 0.860806
Target:  5'- -aGCGgGCACGAgCGGCGGcGGCGGCGg -3'
miRNA:   3'- gaUGUgCGUGCU-GCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 131191 0.73 0.868355
Target:  5'- -gACA-GCACGGCGcCGGGGCGGCGc -3'
miRNA:   3'- gaUGUgCGUGCUGCuGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 179675 0.73 0.868355
Target:  5'- -gGCACcCGCGGCGGCGAcgguGGCGGCGg -3'
miRNA:   3'- gaUGUGcGUGCUGCUGUU----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 186334 0.73 0.875691
Target:  5'- -aACACGauCGACGGCGGcGGCGACGUg -3'
miRNA:   3'- gaUGUGCguGCUGCUGUU-CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 147467 0.73 0.882809
Target:  5'- aCUACGCGCGCGACGACucgcuguucGAGcUGGCc- -3'
miRNA:   3'- -GAUGUGCGUGCUGCUG---------UUCuGCUGca -5'
10964 3' -51.6 NC_002794.1 + 76934 0.72 0.902803
Target:  5'- -cGCGCGCACcauGACGACcgcgGAGACGcCGUc -3'
miRNA:   3'- gaUGUGCGUG---CUGCUG----UUCUGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 82039 0.72 0.909004
Target:  5'- --uCGCGUggGCGGCGGCGGcGGCGGCGUc -3'
miRNA:   3'- gauGUGCG--UGCUGCUGUU-CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 82965 0.72 0.909004
Target:  5'- -gGCGCGCACG-CGACGcaGGucGCGACGc -3'
miRNA:   3'- gaUGUGCGUGCuGCUGU--UC--UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 122623 0.72 0.909004
Target:  5'- --uCACGCGCGGCuacgGGCAcgcGGugGACGUg -3'
miRNA:   3'- gauGUGCGUGCUG----CUGU---UCugCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 157331 0.71 0.920692
Target:  5'- -gACGCGCGucCGGuCGACcGGACGACGc -3'
miRNA:   3'- gaUGUGCGU--GCU-GCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 42219 0.71 0.920692
Target:  5'- uCUGC-CGCugGAUcagccGCGAGACGGCGg -3'
miRNA:   3'- -GAUGuGCGugCUGc----UGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 32872 0.71 0.920692
Target:  5'- ---gGCGgGCGGCGGCGGcGGCGGCGg -3'
miRNA:   3'- gaugUGCgUGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 50288 0.71 0.920692
Target:  5'- gUACGCGUagACGuACGACAGGAUGAUc- -3'
miRNA:   3'- gAUGUGCG--UGC-UGCUGUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 44159 0.71 0.920692
Target:  5'- gUGCACguGCACGGCG-CGAG-CGGCGg -3'
miRNA:   3'- gAUGUG--CGUGCUGCuGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 129916 0.71 0.925639
Target:  5'- -aGCACGCGauucgccaggccgUGGCGACGGcGGCGGCGg -3'
miRNA:   3'- gaUGUGCGU-------------GCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 76675 0.71 0.926177
Target:  5'- -aACACGC-CGACGGCGcAGGCGAa-- -3'
miRNA:   3'- gaUGUGCGuGCUGCUGU-UCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 34747 0.71 0.931422
Target:  5'- ---aGCGCGCGACGGCGcggugGGACG-CGg -3'
miRNA:   3'- gaugUGCGUGCUGCUGU-----UCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 184520 0.71 0.931422
Target:  5'- --cCGCGCGCGGCG-CG-GGCGACGc -3'
miRNA:   3'- gauGUGCGUGCUGCuGUuCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.