miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 184520 0.71 0.931422
Target:  5'- --cCGCGCGCGGCG-CG-GGCGACGc -3'
miRNA:   3'- gauGUGCGUGCUGCuGUuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 75820 0.71 0.931422
Target:  5'- uCUGCAacCGCACGACGuACAAccCGAUGUg -3'
miRNA:   3'- -GAUGU--GCGUGCUGC-UGUUcuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 31080 0.71 0.931422
Target:  5'- -aGCACGUcgaGCGugGcgaAAGGCGACGUg -3'
miRNA:   3'- gaUGUGCG---UGCugCug-UUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 34747 0.71 0.931422
Target:  5'- ---aGCGCGCGACGGCGcggugGGACG-CGg -3'
miRNA:   3'- gaugUGCGUGCUGCUGU-----UCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 102318 0.71 0.936426
Target:  5'- -gACGCGCucgucaugaaagGCGugGaccuggugcGCAAGACGGCGUg -3'
miRNA:   3'- gaUGUGCG------------UGCugC---------UGUUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 54977 0.71 0.936426
Target:  5'- uUGCACGacccgcCGCGGCGACGGcGGCGACu- -3'
miRNA:   3'- gAUGUGC------GUGCUGCUGUU-CUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 16781 0.71 0.941192
Target:  5'- -gGCACGCGcCGACGcCAAaucgccGACGACGc -3'
miRNA:   3'- gaUGUGCGU-GCUGCuGUU------CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 101275 0.71 0.941192
Target:  5'- ---gGCGCcggugGCGGCGGCGgggaggAGACGACGUa -3'
miRNA:   3'- gaugUGCG-----UGCUGCUGU------UCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 36986 0.71 0.941192
Target:  5'- -cGCGCGCAgGuCGGCGAGGCGGa-- -3'
miRNA:   3'- gaUGUGCGUgCuGCUGUUCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 106971 0.71 0.941192
Target:  5'- -cGCcuCGCGCGGCGGCcGGcACGGCGg -3'
miRNA:   3'- gaUGu-GCGUGCUGCUGuUC-UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 121744 0.71 0.941192
Target:  5'- -----aGCACGGCGGCGAGACGGa-- -3'
miRNA:   3'- gaugugCGUGCUGCUGUUCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 18245 0.7 0.94572
Target:  5'- -aGCGCGCGCGGcCGACc-GGCGACc- -3'
miRNA:   3'- gaUGUGCGUGCU-GCUGuuCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 3748 0.7 0.94572
Target:  5'- -cGCaACGCGCGucACGGCGGGGCGGgGg -3'
miRNA:   3'- gaUG-UGCGUGC--UGCUGUUCUGCUgCa -5'
10964 3' -51.6 NC_002794.1 + 154447 0.7 0.94572
Target:  5'- -aGC-CGCACGACG-CGAaGCGACGa -3'
miRNA:   3'- gaUGuGCGUGCUGCuGUUcUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 152450 0.7 0.94572
Target:  5'- gCUACGCGUACGACccgGACGAccaGACGUu -3'
miRNA:   3'- -GAUGUGCGUGCUG---CUGUUcugCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 141305 0.7 0.94572
Target:  5'- -gGCGCGCcgGCGACGGCAc--CGGCGUc -3'
miRNA:   3'- gaUGUGCG--UGCUGCUGUucuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 127240 0.7 0.94572
Target:  5'- gCUACACGgccacggcCACGACGACGAccacgaccGCGACGg -3'
miRNA:   3'- -GAUGUGC--------GUGCUGCUGUUc-------UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 102514 0.7 0.94572
Target:  5'- -gGCugGCGCG-CGcGCGGGACGACc- -3'
miRNA:   3'- gaUGugCGUGCuGC-UGUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 112098 0.7 0.94572
Target:  5'- uUGCGCGUccagGCG-CGGcCGGGACGACGg -3'
miRNA:   3'- gAUGUGCG----UGCuGCU-GUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 122184 0.7 0.950013
Target:  5'- -gGCGCGCGCGuguGCGACGcGGCGaaGCGg -3'
miRNA:   3'- gaUGUGCGUGC---UGCUGUuCUGC--UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.