miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 142486 0.7 0.950013
Target:  5'- -gACGCGUGCGGCGccgGCA--GCGACGUg -3'
miRNA:   3'- gaUGUGCGUGCUGC---UGUucUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 88061 0.7 0.950013
Target:  5'- -cGCGCGCGCGAgggGGCGGGGCcGCGg -3'
miRNA:   3'- gaUGUGCGUGCUg--CUGUUCUGcUGCa -5'
10964 3' -51.6 NC_002794.1 + 143463 0.7 0.950013
Target:  5'- --cCGCGCGCGAUGAaCGgcuggcAGACGAUGUc -3'
miRNA:   3'- gauGUGCGUGCUGCU-GU------UCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 122184 0.7 0.950013
Target:  5'- -gGCGCGCGCGuguGCGACGcGGCGaaGCGg -3'
miRNA:   3'- gaUGUGCGUGC---UGCUGUuCUGC--UGCa -5'
10964 3' -51.6 NC_002794.1 + 142306 0.7 0.953678
Target:  5'- gUACAgGUggcggagGCGGCGGCGcAGGCGGCGg -3'
miRNA:   3'- gAUGUgCG-------UGCUGCUGU-UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 186278 0.7 0.954074
Target:  5'- --cCugGCGCGGCGGCAccgcggccAGGCGGCc- -3'
miRNA:   3'- gauGugCGUGCUGCUGU--------UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 165412 0.7 0.954074
Target:  5'- --cCAgGUACGACGAgAAGACGAgacCGUg -3'
miRNA:   3'- gauGUgCGUGCUGCUgUUCUGCU---GCA- -5'
10964 3' -51.6 NC_002794.1 + 106273 0.7 0.957532
Target:  5'- -cGCGCGUcgcgccgccucggACGGCGA-GAGACGACGa -3'
miRNA:   3'- gaUGUGCG-------------UGCUGCUgUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 112336 0.7 0.957905
Target:  5'- -aGCGCGCcggcCGGCGGCGccGGCGGCGg -3'
miRNA:   3'- gaUGUGCGu---GCUGCUGUu-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 78378 0.7 0.957905
Target:  5'- cCUGCucCGCcaGCGACGGC--GACGACGa -3'
miRNA:   3'- -GAUGu-GCG--UGCUGCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 98365 0.7 0.957905
Target:  5'- -cGC-CGCGCGGCuGGCGGGA-GACGUg -3'
miRNA:   3'- gaUGuGCGUGCUG-CUGUUCUgCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 94006 0.7 0.957905
Target:  5'- ---gGCGC-CGGCGGCGGGcCGGCGg -3'
miRNA:   3'- gaugUGCGuGCUGCUGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 58834 0.7 0.961512
Target:  5'- cCUGC-CGCGCGAgGACGc--CGACGUg -3'
miRNA:   3'- -GAUGuGCGUGCUgCUGUucuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 115925 0.7 0.961512
Target:  5'- --cUugGCGCGGCGGCGGGcCGGCc- -3'
miRNA:   3'- gauGugCGUGCUGCUGUUCuGCUGca -5'
10964 3' -51.6 NC_002794.1 + 95756 0.7 0.961512
Target:  5'- gUACuCGCGgGGCGGCGGccgcGACGGCGg -3'
miRNA:   3'- gAUGuGCGUgCUGCUGUU----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 178225 0.7 0.961512
Target:  5'- ---gGCGUACGAaacgGAUggGACGACGa -3'
miRNA:   3'- gaugUGCGUGCUg---CUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 140099 0.69 0.964899
Target:  5'- --cCAUGguCGGCGGCGAucGACGGCGg -3'
miRNA:   3'- gauGUGCguGCUGCUGUU--CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 181169 0.69 0.964899
Target:  5'- --cCGCGC-CGACGGCGA-ACGGCGg -3'
miRNA:   3'- gauGUGCGuGCUGCUGUUcUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 27379 0.69 0.968071
Target:  5'- -aACACGCACGGgucgacCGACcGGAUGACc- -3'
miRNA:   3'- gaUGUGCGUGCU------GCUGuUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 37740 0.69 0.968071
Target:  5'- -gGCGcCGCcgGCGGCGGCGcGGCGGCGc -3'
miRNA:   3'- gaUGU-GCG--UGCUGCUGUuCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.