miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 27379 0.69 0.968071
Target:  5'- -aACACGCACGGgucgacCGACcGGAUGACc- -3'
miRNA:   3'- gaUGUGCGUGCU------GCUGuUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 156471 0.69 0.971034
Target:  5'- -gGgGCGgGgGACGACGGGGCGGCu- -3'
miRNA:   3'- gaUgUGCgUgCUGCUGUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 126253 0.69 0.971034
Target:  5'- -gGCGCGCGagguCGGCGGCuggcuGGCGGCGc -3'
miRNA:   3'- gaUGUGCGU----GCUGCUGuu---CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 123400 0.69 0.971034
Target:  5'- gCUGCucCGCGuCGGCGugGAGuACGACa- -3'
miRNA:   3'- -GAUGu-GCGU-GCUGCugUUC-UGCUGca -5'
10964 3' -51.6 NC_002794.1 + 184593 0.69 0.971034
Target:  5'- --cCACGCGCGGCcGCGGGAuCGGCa- -3'
miRNA:   3'- gauGUGCGUGCUGcUGUUCU-GCUGca -5'
10964 3' -51.6 NC_002794.1 + 20534 0.69 0.973795
Target:  5'- -gACugGCguucGCGACGAC-GGGCGACc- -3'
miRNA:   3'- gaUGugCG----UGCUGCUGuUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 137869 0.69 0.973795
Target:  5'- -cACAUGUGCGGCGuCuGGugGGCGa -3'
miRNA:   3'- gaUGUGCGUGCUGCuGuUCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 112386 0.69 0.973795
Target:  5'- -gGCACGCAgGGCGGCGAucuUGGCGc -3'
miRNA:   3'- gaUGUGCGUgCUGCUGUUcu-GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 116128 0.69 0.973795
Target:  5'- --cCGC-CGCGGCGGCGGcGGCGGCGg -3'
miRNA:   3'- gauGUGcGUGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 43188 0.69 0.976359
Target:  5'- uUGCGCGCGcCGAcCGGgAAGGUGGCGUg -3'
miRNA:   3'- gAUGUGCGU-GCU-GCUgUUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 125539 0.69 0.976359
Target:  5'- -aACGaGCGCGGCGGCAGcgguuucuucGGCGACGc -3'
miRNA:   3'- gaUGUgCGUGCUGCUGUU----------CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 40526 0.69 0.976359
Target:  5'- -gACGCGC-CGACGG-GAGACGAgGg -3'
miRNA:   3'- gaUGUGCGuGCUGCUgUUCUGCUgCa -5'
10964 3' -51.6 NC_002794.1 + 61888 0.69 0.976359
Target:  5'- -gGCGcCGCGCGGCGagcgcgGCGAGcgcaGCGACGUc -3'
miRNA:   3'- gaUGU-GCGUGCUGC------UGUUC----UGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 59203 0.69 0.976359
Target:  5'- -gACGCGCACGuCGGCGucucGGccGCGGCGc -3'
miRNA:   3'- gaUGUGCGUGCuGCUGU----UC--UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 126391 0.69 0.976359
Target:  5'- -gGCcUGCGCGGCGGCGugcGCGGCGg -3'
miRNA:   3'- gaUGuGCGUGCUGCUGUuc-UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 32625 0.68 0.978041
Target:  5'- -gGCcCGCcgacgaagagggggGCGACGAcCGGGGCGACGg -3'
miRNA:   3'- gaUGuGCG--------------UGCUGCU-GUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 89873 0.68 0.978735
Target:  5'- gCUugGCGCcUGGCGAaccgucGACGACGUc -3'
miRNA:   3'- -GAugUGCGuGCUGCUguu---CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 141098 0.68 0.978735
Target:  5'- -aACugGCGCGACGGuCGugGGACGAa-- -3'
miRNA:   3'- gaUGugCGUGCUGCU-GU--UCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 71323 0.68 0.978735
Target:  5'- -aGCGCGCcaccuCGGCGGCGaugucguccgccAGGCGGCGc -3'
miRNA:   3'- gaUGUGCGu----GCUGCUGU------------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 87354 0.68 0.978735
Target:  5'- -aGCGgGUcCGGCGGCGAG-CGGCGUu -3'
miRNA:   3'- gaUGUgCGuGCUGCUGUUCuGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.