Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10964 | 3' | -51.6 | NC_002794.1 | + | 132184 | 0.66 | 0.994663 |
Target: 5'- aCUAgACGCucCGACuggggGACGGGuGCGACGUc -3' miRNA: 3'- -GAUgUGCGu-GCUG-----CUGUUC-UGCUGCA- -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 152640 | 0.66 | 0.994663 |
Target: 5'- -gGCgGCGUuCGAgCGGCGAGACGuCGUg -3' miRNA: 3'- gaUG-UGCGuGCU-GCUGUUCUGCuGCA- -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 90280 | 0.66 | 0.994663 |
Target: 5'- -cGCGCGCGCGGuCGAgCucGcCGACGUu -3' miRNA: 3'- gaUGUGCGUGCU-GCU-GuuCuGCUGCA- -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 187659 | 0.66 | 0.994663 |
Target: 5'- cCU-CGCGgucCACGACGAUcGGGCGAUGc -3' miRNA: 3'- -GAuGUGC---GUGCUGCUGuUCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 61527 | 0.66 | 0.994584 |
Target: 5'- -gGC-CGC-CGGCGGCcgccgcgAAGACGACGc -3' miRNA: 3'- gaUGuGCGuGCUGCUG-------UUCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 48938 | 0.67 | 0.993837 |
Target: 5'- -cAgGCGCuCGGCGACcucuucgcAGACGGCGa -3' miRNA: 3'- gaUgUGCGuGCUGCUGu-------UCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 150648 | 0.67 | 0.993837 |
Target: 5'- -gGCACGCGCGuCGACcuGGGCuGGCc- -3' miRNA: 3'- gaUGUGCGUGCuGCUGu-UCUG-CUGca -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 58935 | 0.67 | 0.993837 |
Target: 5'- cCUGCACGCcauggACGAgGACGAGcCGcucuuCGUg -3' miRNA: 3'- -GAUGUGCG-----UGCUgCUGUUCuGCu----GCA- -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 32256 | 0.67 | 0.993837 |
Target: 5'- gCUGCugGCGCucGACGGCcGGccgauCGGCGa -3' miRNA: 3'- -GAUGugCGUG--CUGCUGuUCu----GCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 178429 | 0.67 | 0.993837 |
Target: 5'- -gAC-CGCGCGACGGgCGGuGACGcCGUg -3' miRNA: 3'- gaUGuGCGUGCUGCU-GUU-CUGCuGCA- -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 92494 | 0.67 | 0.993837 |
Target: 5'- -----gGUGCGugGACGAGGCGGCc- -3' miRNA: 3'- gaugugCGUGCugCUGUUCUGCUGca -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 84138 | 0.67 | 0.993837 |
Target: 5'- -cGCACGCG-GAC-ACGAGcGCGACGg -3' miRNA: 3'- gaUGUGCGUgCUGcUGUUC-UGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 35856 | 0.67 | 0.993837 |
Target: 5'- --cCGCGCGacCGACGACGAGAgaACGa -3' miRNA: 3'- gauGUGCGU--GCUGCUGUUCUgcUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 185554 | 0.67 | 0.993837 |
Target: 5'- -gGC-CGCGCGccccgcccugccGCGGCAGGGCGcGCGg -3' miRNA: 3'- gaUGuGCGUGC------------UGCUGUUCUGC-UGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 55278 | 0.67 | 0.993837 |
Target: 5'- -gGCgGCGgugGCGGCGACgAGGGCGGCGg -3' miRNA: 3'- gaUG-UGCg--UGCUGCUG-UUCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 79439 | 0.67 | 0.993749 |
Target: 5'- -gGCG-GCgGCGGCGACcggcgcgGAGACGACGa -3' miRNA: 3'- gaUGUgCG-UGCUGCUG-------UUCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 128277 | 0.67 | 0.993749 |
Target: 5'- -aGCGCGgAgcCGACGGCcgucuucgacaccGAGACGGCGa -3' miRNA: 3'- gaUGUGCgU--GCUGCUG-------------UUCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 184483 | 0.67 | 0.992911 |
Target: 5'- -gGCGCGCGgGGCcccgGACGcccGGGCGGCGc -3' miRNA: 3'- gaUGUGCGUgCUG----CUGU---UCUGCUGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 18700 | 0.67 | 0.992911 |
Target: 5'- -gGCACG-GCGGCGGCGguccGGACGuCGg -3' miRNA: 3'- gaUGUGCgUGCUGCUGU----UCUGCuGCa -5' |
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10964 | 3' | -51.6 | NC_002794.1 | + | 183068 | 0.67 | 0.992911 |
Target: 5'- gCU-CGCGCugGACGggaACGAGAgCGAgGUc -3' miRNA: 3'- -GAuGUGCGugCUGC---UGUUCU-GCUgCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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