miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 184483 0.67 0.992911
Target:  5'- -gGCGCGCGgGGCcccgGACGcccGGGCGGCGc -3'
miRNA:   3'- gaUGUGCGUgCUG----CUGU---UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 35562 0.67 0.992911
Target:  5'- -cGCGCGCGCGugGugGcccaGGCGUu -3'
miRNA:   3'- gaUGUGCGUGCugCugUucugCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 56300 0.67 0.992812
Target:  5'- aUGCGCGCGCGgucgcggucgcugGCGGCcguggccGGCGACGc -3'
miRNA:   3'- gAUGUGCGUGC-------------UGCUGuu-----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64743 0.67 0.992812
Target:  5'- -cACGgGCAccgaaggaccCGACGACGucuuucgGGACGACGa -3'
miRNA:   3'- gaUGUgCGU----------GCUGCUGU-------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 37794 0.67 0.991877
Target:  5'- -cGCAgGCGCcuCGACGAGACGGuCGc -3'
miRNA:   3'- gaUGUgCGUGcuGCUGUUCUGCU-GCa -5'
10964 3' -51.6 NC_002794.1 + 81680 0.67 0.991877
Target:  5'- uCUuCGCGCACuACGACAAGACcauCGc -3'
miRNA:   3'- -GAuGUGCGUGcUGCUGUUCUGcu-GCa -5'
10964 3' -51.6 NC_002794.1 + 100320 0.67 0.991877
Target:  5'- -gGCACGCGCGGcCGGCGcacGGcCGGCu- -3'
miRNA:   3'- gaUGUGCGUGCU-GCUGU---UCuGCUGca -5'
10964 3' -51.6 NC_002794.1 + 91126 0.67 0.991877
Target:  5'- gUGC-CGUGCGugGAgGAGGCG-CGg -3'
miRNA:   3'- gAUGuGCGUGCugCUgUUCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 110631 0.67 0.991877
Target:  5'- -gGCGC-CGCGGCGGCGGGGucggguuucucCGGCGg -3'
miRNA:   3'- gaUGUGcGUGCUGCUGUUCU-----------GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 115037 0.67 0.991877
Target:  5'- uCUGCAgGUGCGACcgGGCGgcGGGCGGCa- -3'
miRNA:   3'- -GAUGUgCGUGCUG--CUGU--UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 139737 0.67 0.991877
Target:  5'- -aGCACGC-CGACGgucaACAGGuuGGCGa -3'
miRNA:   3'- gaUGUGCGuGCUGC----UGUUCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 101639 0.67 0.991877
Target:  5'- --cCGCGaGCGugGGCGggcGGGCGGCGg -3'
miRNA:   3'- gauGUGCgUGCugCUGU---UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 187950 0.67 0.991877
Target:  5'- gUGCGCGCGCGAgcGCGGGACcuCGg -3'
miRNA:   3'- gAUGUGCGUGCUgcUGUUCUGcuGCa -5'
10964 3' -51.6 NC_002794.1 + 152380 0.67 0.991877
Target:  5'- -gACACGCugGACGACc--GCGcGCGc -3'
miRNA:   3'- gaUGUGCGugCUGCUGuucUGC-UGCa -5'
10964 3' -51.6 NC_002794.1 + 23720 0.67 0.990728
Target:  5'- -aAC-CGCGCG-CGGCGGGccCGACGUa -3'
miRNA:   3'- gaUGuGCGUGCuGCUGUUCu-GCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 133824 0.67 0.990728
Target:  5'- uCUACGCGUACGAUcGCuuggAAGACG-CGg -3'
miRNA:   3'- -GAUGUGCGUGCUGcUG----UUCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 83764 0.67 0.990728
Target:  5'- uCUGCcCGUACGACGAC--GACGcCGc -3'
miRNA:   3'- -GAUGuGCGUGCUGCUGuuCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 17281 0.67 0.990359
Target:  5'- -gGCACGCcgccgccgacggucACGACGAUcacgacgguGACGACGg -3'
miRNA:   3'- gaUGUGCG--------------UGCUGCUGuu-------CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 117666 0.67 0.989979
Target:  5'- --cCACGCGCGGCGGCGcguacugcacguAggccucgcacgccgcGACGGCGUg -3'
miRNA:   3'- gauGUGCGUGCUGCUGU------------U---------------CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 84042 0.67 0.989454
Target:  5'- -gGCACgaacgGCACGACGcCGccucccagccggAGACGACGa -3'
miRNA:   3'- gaUGUG-----CGUGCUGCuGU------------UCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.