miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 29909 0.66 0.995397
Target:  5'- -cACAgGgAcCGACGACGGGcaGCGACGa -3'
miRNA:   3'- gaUGUgCgU-GCUGCUGUUC--UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 31080 0.71 0.931422
Target:  5'- -aGCACGUcgaGCGugGcgaAAGGCGACGUg -3'
miRNA:   3'- gaUGUGCG---UGCugCug-UUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 32256 0.67 0.993837
Target:  5'- gCUGCugGCGCucGACGGCcGGccgauCGGCGa -3'
miRNA:   3'- -GAUGugCGUG--CUGCUGuUCu----GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 32625 0.68 0.978041
Target:  5'- -gGCcCGCcgacgaagagggggGCGACGAcCGGGGCGACGg -3'
miRNA:   3'- gaUGuGCG--------------UGCUGCU-GUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 32872 0.71 0.920692
Target:  5'- ---gGCGgGCGGCGGCGGcGGCGGCGg -3'
miRNA:   3'- gaugUGCgUGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 34241 0.68 0.982949
Target:  5'- gCUGCACGCGCGGCugccgccgcaGGCGgaccgcgcgcAGGCGGCc- -3'
miRNA:   3'- -GAUGUGCGUGCUG----------CUGU----------UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 34747 0.71 0.931422
Target:  5'- ---aGCGCGCGACGGCGcggugGGACG-CGg -3'
miRNA:   3'- gaugUGCGUGCUGCUGU-----UCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 35562 0.67 0.992911
Target:  5'- -cGCGCGCGCGugGugGcccaGGCGUu -3'
miRNA:   3'- gaUGUGCGUGCugCugUucugCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 35856 0.67 0.993837
Target:  5'- --cCGCGCGacCGACGACGAGAgaACGa -3'
miRNA:   3'- gauGUGCGU--GCUGCUGUUCUgcUGCa -5'
10964 3' -51.6 NC_002794.1 + 36950 0.66 0.996619
Target:  5'- -cGCGuCGCGCGGCGGCAGGcaguCG-CGc -3'
miRNA:   3'- gaUGU-GCGUGCUGCUGUUCu---GCuGCa -5'
10964 3' -51.6 NC_002794.1 + 36986 0.71 0.941192
Target:  5'- -cGCGCGCAgGuCGGCGAGGCGGa-- -3'
miRNA:   3'- gaUGUGCGUgCuGCUGUUCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 37280 0.66 0.994663
Target:  5'- -cGCGgGCGCGGCGuACAAcGAC-ACGUa -3'
miRNA:   3'- gaUGUgCGUGCUGC-UGUU-CUGcUGCA- -5'
10964 3' -51.6 NC_002794.1 + 37740 0.69 0.968071
Target:  5'- -gGCGcCGCcgGCGGCGGCGcGGCGGCGc -3'
miRNA:   3'- gaUGU-GCG--UGCUGCUGUuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 37794 0.67 0.991877
Target:  5'- -cGCAgGCGCcuCGACGAGACGGuCGc -3'
miRNA:   3'- gaUGUgCGUGcuGCUGUUCUGCU-GCa -5'
10964 3' -51.6 NC_002794.1 + 38096 0.67 0.989454
Target:  5'- -aGCGCGaC-CGGCGugAAGACG-CGg -3'
miRNA:   3'- gaUGUGC-GuGCUGCugUUCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 40526 0.69 0.976359
Target:  5'- -gACGCGC-CGACGG-GAGACGAgGg -3'
miRNA:   3'- gaUGUGCGuGCUGCUgUUCUGCUgCa -5'
10964 3' -51.6 NC_002794.1 + 42219 0.71 0.920692
Target:  5'- uCUGC-CGCugGAUcagccGCGAGACGGCGg -3'
miRNA:   3'- -GAUGuGCGugCUGc----UGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 43188 0.69 0.976359
Target:  5'- uUGCGCGCGcCGAcCGGgAAGGUGGCGUg -3'
miRNA:   3'- gAUGUGCGU-GCU-GCUgUUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 44159 0.71 0.920692
Target:  5'- gUGCACguGCACGGCG-CGAG-CGGCGg -3'
miRNA:   3'- gAUGUG--CGUGCUGCuGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 44324 0.73 0.853049
Target:  5'- -cGCGaGCGCGGCGGCGaagaAGACGGCGc -3'
miRNA:   3'- gaUGUgCGUGCUGCUGU----UCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.