miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 46314 0.66 0.996565
Target:  5'- -aGCGCG-GCGGCGACGgcgccgucgccgcGGACGGCu- -3'
miRNA:   3'- gaUGUGCgUGCUGCUGU-------------UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 48938 0.67 0.993837
Target:  5'- -cAgGCGCuCGGCGACcucuucgcAGACGGCGa -3'
miRNA:   3'- gaUgUGCGuGCUGCUGu-------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 49014 0.66 0.996619
Target:  5'- -cGCGC-CGCGGCGGCc--GCGGCGUc -3'
miRNA:   3'- gaUGUGcGUGCUGCUGuucUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 50288 0.71 0.920692
Target:  5'- gUACGCGUagACGuACGACAGGAUGAUc- -3'
miRNA:   3'- gAUGUGCG--UGC-UGCUGUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 50580 0.66 0.994663
Target:  5'- -gGCGUGCGCGGCGGCuGGGugGcCGg -3'
miRNA:   3'- gaUGUGCGUGCUGCUG-UUCugCuGCa -5'
10964 3' -51.6 NC_002794.1 + 53264 0.75 0.756122
Target:  5'- -cGC-CGCGCGACaACGGGGCGGCGa -3'
miRNA:   3'- gaUGuGCGUGCUGcUGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 53549 0.66 0.995397
Target:  5'- -cGCACaGCcCGugGACGuAGACGGCc- -3'
miRNA:   3'- gaUGUG-CGuGCugCUGU-UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 53761 0.66 0.996047
Target:  5'- -cGC-CGCugcCGGCGGCGGGACGcccGCGa -3'
miRNA:   3'- gaUGuGCGu--GCUGCUGUUCUGC---UGCa -5'
10964 3' -51.6 NC_002794.1 + 54977 0.71 0.936426
Target:  5'- uUGCACGacccgcCGCGGCGACGGcGGCGACu- -3'
miRNA:   3'- gAUGUGC------GUGCUGCUGUU-CUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 55177 0.66 0.994663
Target:  5'- ---aGCGgGCGACu-CGAGGCGGCGg -3'
miRNA:   3'- gaugUGCgUGCUGcuGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 55232 0.68 0.9865
Target:  5'- -aGC-CG-ACGACGAUgAAGACGACGa -3'
miRNA:   3'- gaUGuGCgUGCUGCUG-UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 55278 0.67 0.993837
Target:  5'- -gGCgGCGgugGCGGCGACgAGGGCGGCGg -3'
miRNA:   3'- gaUG-UGCg--UGCUGCUG-UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 55822 0.68 0.986337
Target:  5'- -gGCGCGCGCuGAUGGCGaagagcagcuuguAGugGAUGg -3'
miRNA:   3'- gaUGUGCGUG-CUGCUGU-------------UCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 56300 0.67 0.992812
Target:  5'- aUGCGCGCGCGgucgcggucgcugGCGGCcguggccGGCGACGc -3'
miRNA:   3'- gAUGUGCGUGC-------------UGCUGuu-----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 57840 0.68 0.982949
Target:  5'- -aGCACGCugGACaACGAGGucaagcucacCGACGc -3'
miRNA:   3'- gaUGUGCGugCUGcUGUUCU----------GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 57973 0.68 0.982949
Target:  5'- gCUGCuC-UACGACGGCGAGcCGACGc -3'
miRNA:   3'- -GAUGuGcGUGCUGCUGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 58834 0.7 0.961512
Target:  5'- cCUGC-CGCGCGAgGACGc--CGACGUg -3'
miRNA:   3'- -GAUGuGCGUGCUgCUGUucuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 58935 0.67 0.993837
Target:  5'- cCUGCACGCcauggACGAgGACGAGcCGcucuuCGUg -3'
miRNA:   3'- -GAUGUGCG-----UGCUgCUGUUCuGCu----GCA- -5'
10964 3' -51.6 NC_002794.1 + 58979 0.74 0.83694
Target:  5'- -aGCGCcuGCGCGACGACGAGcUGGCGc -3'
miRNA:   3'- gaUGUG--CGUGCUGCUGUUCuGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 59203 0.69 0.976359
Target:  5'- -gACGCGCACGuCGGCGucucGGccGCGGCGc -3'
miRNA:   3'- gaUGUGCGUGCuGCUGU----UC--UGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.