miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 61527 0.66 0.994584
Target:  5'- -gGC-CGC-CGGCGGCcgccgcgAAGACGACGc -3'
miRNA:   3'- gaUGuGCGuGCUGCUG-------UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 61888 0.69 0.976359
Target:  5'- -gGCGcCGCGCGGCGagcgcgGCGAGcgcaGCGACGUc -3'
miRNA:   3'- gaUGU-GCGUGCUGC------UGUUC----UGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 62072 0.74 0.83694
Target:  5'- -gGCgACGCcgGCGGCGACGAcGGCGACGc -3'
miRNA:   3'- gaUG-UGCG--UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 62476 0.75 0.79353
Target:  5'- -gGCGCGCcuCGACGagcGCGAGugGACGg -3'
miRNA:   3'- gaUGUGCGu-GCUGC---UGUUCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 63452 0.75 0.775083
Target:  5'- -gGC-CGCgGCGGCGACGAuGACGACGa -3'
miRNA:   3'- gaUGuGCG-UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 63484 0.66 0.997122
Target:  5'- -gGC-CGCcguCGACGACGccGCGGCGUc -3'
miRNA:   3'- gaUGuGCGu--GCUGCUGUucUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 63683 0.76 0.716956
Target:  5'- -gGC-CGCgGCGACGACGAuGACGACGa -3'
miRNA:   3'- gaUGuGCG-UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64705 0.77 0.676623
Target:  5'- -aGCGCGgACGAgGACGAcGACGACGa -3'
miRNA:   3'- gaUGUGCgUGCUgCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64743 0.67 0.992812
Target:  5'- -cACGgGCAccgaaggaccCGACGACGucuuucgGGACGACGa -3'
miRNA:   3'- gaUGUgCGU----------GCUGCUGU-------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 64833 0.74 0.845092
Target:  5'- ---gGCGC-CGACGACcGGACGGCGc -3'
miRNA:   3'- gaugUGCGuGCUGCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 69506 0.66 0.997122
Target:  5'- -cACGCGCACGGu--CAGGuACGGCGc -3'
miRNA:   3'- gaUGUGCGUGCUgcuGUUC-UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 71323 0.68 0.978735
Target:  5'- -aGCGCGCcaccuCGGCGGCGaugucguccgccAGGCGGCGc -3'
miRNA:   3'- gaUGUGCGu----GCUGCUGU------------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 75820 0.71 0.931422
Target:  5'- uCUGCAacCGCACGACGuACAAccCGAUGUg -3'
miRNA:   3'- -GAUGU--GCGUGCUGC-UGUUcuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 76675 0.71 0.926177
Target:  5'- -aACACGC-CGACGGCGcAGGCGAa-- -3'
miRNA:   3'- gaUGUGCGuGCUGCUGU-UCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 76934 0.72 0.902803
Target:  5'- -cGCGCGCACcauGACGACcgcgGAGACGcCGUc -3'
miRNA:   3'- gaUGUGCGUG---CUGCUG----UUCUGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 78378 0.7 0.957905
Target:  5'- cCUGCucCGCcaGCGACGGC--GACGACGa -3'
miRNA:   3'- -GAUGu-GCG--UGCUGCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 78804 0.68 0.988047
Target:  5'- -cGCGCGUcaACGACGugAGGuCGGCc- -3'
miRNA:   3'- gaUGUGCG--UGCUGCugUUCuGCUGca -5'
10964 3' -51.6 NC_002794.1 + 79439 0.67 0.993749
Target:  5'- -gGCG-GCgGCGGCGACcggcgcgGAGACGACGa -3'
miRNA:   3'- gaUGUgCG-UGCUGCUG-------UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 79953 0.66 0.995397
Target:  5'- aCUGCgagcucgugGCGUACGAccccCGGCucGGCGACGa -3'
miRNA:   3'- -GAUG---------UGCGUGCU----GCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 80583 0.66 0.996047
Target:  5'- -cGCACGgGCuGACgGACGAGAaccUGACGg -3'
miRNA:   3'- gaUGUGCgUG-CUG-CUGUUCU---GCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.