miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 187950 0.67 0.991877
Target:  5'- gUGCGCGCGCGAgcGCGGGACcuCGg -3'
miRNA:   3'- gAUGUGCGUGCUgcUGUUCUGcuGCa -5'
10964 3' -51.6 NC_002794.1 + 187659 0.66 0.994663
Target:  5'- cCU-CGCGgucCACGACGAUcGGGCGAUGc -3'
miRNA:   3'- -GAuGUGC---GUGCUGCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 187476 0.66 0.996047
Target:  5'- -gGCGCGCGCcgggccGAgGACGAGGCcGCGc -3'
miRNA:   3'- gaUGUGCGUG------CUgCUGUUCUGcUGCa -5'
10964 3' -51.6 NC_002794.1 + 186334 0.73 0.875691
Target:  5'- -aACACGauCGACGGCGGcGGCGACGUg -3'
miRNA:   3'- gaUGUGCguGCUGCUGUU-CUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 186278 0.7 0.954074
Target:  5'- --cCugGCGCGGCGGCAccgcggccAGGCGGCc- -3'
miRNA:   3'- gauGugCGUGCUGCUGU--------UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 185617 0.66 0.996619
Target:  5'- -aACACccgaGCGACGGCGAGcgagacucgaGCGGCGg -3'
miRNA:   3'- gaUGUGcg--UGCUGCUGUUC----------UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 185554 0.67 0.993837
Target:  5'- -gGC-CGCGCGccccgcccugccGCGGCAGGGCGcGCGg -3'
miRNA:   3'- gaUGuGCGUGC------------UGCUGUUCUGC-UGCa -5'
10964 3' -51.6 NC_002794.1 + 185441 0.66 0.997122
Target:  5'- --cCAUGCGCGgacaggucuccGCGACAaacgccgcGGGCGGCGg -3'
miRNA:   3'- gauGUGCGUGC-----------UGCUGU--------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 185119 0.68 0.984803
Target:  5'- -aGCAUGUGC-ACGACcAGGCGGCGc -3'
miRNA:   3'- gaUGUGCGUGcUGCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 184593 0.69 0.971034
Target:  5'- --cCACGCGCGGCcGCGGGAuCGGCa- -3'
miRNA:   3'- gauGUGCGUGCUGcUGUUCU-GCUGca -5'
10964 3' -51.6 NC_002794.1 + 184520 0.71 0.931422
Target:  5'- --cCGCGCGCGGCG-CG-GGCGACGc -3'
miRNA:   3'- gauGUGCGUGCUGCuGUuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 184483 0.67 0.992911
Target:  5'- -gGCGCGCGgGGCcccgGACGcccGGGCGGCGc -3'
miRNA:   3'- gaUGUGCGUgCUG----CUGU---UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 184074 0.66 0.997122
Target:  5'- -gGCACGCGCccacgguguaGCGGCAGaACGGCGa -3'
miRNA:   3'- gaUGUGCGUGc---------UGCUGUUcUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 183068 0.67 0.992911
Target:  5'- gCU-CGCGCugGACGggaACGAGAgCGAgGUc -3'
miRNA:   3'- -GAuGUGCGugCUGC---UGUUCU-GCUgCA- -5'
10964 3' -51.6 NC_002794.1 + 181169 0.69 0.964899
Target:  5'- --cCGCGC-CGACGGCGA-ACGGCGg -3'
miRNA:   3'- gauGUGCGuGCUGCUGUUcUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 180619 0.68 0.982161
Target:  5'- --cCACGaCACGGCGGCccacccgcgcuccAGACGACGa -3'
miRNA:   3'- gauGUGC-GUGCUGCUGu------------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 180303 0.68 0.9865
Target:  5'- -aACACGCcggccgGCG-CGACcAGACGAUGa -3'
miRNA:   3'- gaUGUGCG------UGCuGCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 179675 0.73 0.868355
Target:  5'- -gGCACcCGCGGCGGCGAcgguGGCGGCGg -3'
miRNA:   3'- gaUGUGcGUGCUGCUGUU----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 179198 0.71 0.931422
Target:  5'- -gGCACGCcccggcCGGCGGCAcGACgGACGUg -3'
miRNA:   3'- gaUGUGCGu-----GCUGCUGUuCUG-CUGCA- -5'
10964 3' -51.6 NC_002794.1 + 178429 0.67 0.993837
Target:  5'- -gAC-CGCGCGACGGgCGGuGACGcCGUg -3'
miRNA:   3'- gaUGuGCGUGCUGCU-GUU-CUGCuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.