miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 178225 0.7 0.961512
Target:  5'- ---gGCGUACGAaacgGAUggGACGACGa -3'
miRNA:   3'- gaugUGCGUGCUg---CUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 166238 0.66 0.996619
Target:  5'- --cCGCGaCAUGACGugGaaguguguGGGCGGCGg -3'
miRNA:   3'- gauGUGC-GUGCUGCugU--------UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 165412 0.7 0.954074
Target:  5'- --cCAgGUACGACGAgAAGACGAgacCGUg -3'
miRNA:   3'- gauGUgCGUGCUGCUgUUCUGCU---GCA- -5'
10964 3' -51.6 NC_002794.1 + 158755 0.68 0.9865
Target:  5'- gUGCGCGCACGugGugAucGGuuGACc- -3'
miRNA:   3'- gAUGUGCGUGCugCugU--UCugCUGca -5'
10964 3' -51.6 NC_002794.1 + 157331 0.71 0.920692
Target:  5'- -gACGCGCGucCGGuCGACcGGACGACGc -3'
miRNA:   3'- gaUGUGCGU--GCU-GCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 156471 0.69 0.971034
Target:  5'- -gGgGCGgGgGACGACGGGGCGGCu- -3'
miRNA:   3'- gaUgUGCgUgCUGCUGUUCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 154933 0.71 0.931422
Target:  5'- uCUGCGCGU-CGAUGGCcuguugcagaAAGGCGACGa -3'
miRNA:   3'- -GAUGUGCGuGCUGCUG----------UUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 154447 0.7 0.94572
Target:  5'- -aGC-CGCACGACG-CGAaGCGACGa -3'
miRNA:   3'- gaUGuGCGUGCUGCuGUUcUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 154207 0.74 0.820082
Target:  5'- -gAgACGCugGcGCGGCAAGGCGugGa -3'
miRNA:   3'- gaUgUGCGugC-UGCUGUUCUGCugCa -5'
10964 3' -51.6 NC_002794.1 + 153689 0.68 0.984803
Target:  5'- -gACGCGCGacCGGCGACcGGuuuagcgaccGCGACGUc -3'
miRNA:   3'- gaUGUGCGU--GCUGCUGuUC----------UGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 153010 0.68 0.980929
Target:  5'- -----aGCACGGCGGacuGGGCGACGg -3'
miRNA:   3'- gaugugCGUGCUGCUgu-UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 152640 0.66 0.994663
Target:  5'- -gGCgGCGUuCGAgCGGCGAGACGuCGUg -3'
miRNA:   3'- gaUG-UGCGuGCU-GCUGUUCUGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 152450 0.7 0.94572
Target:  5'- gCUACGCGUACGACccgGACGAccaGACGUu -3'
miRNA:   3'- -GAUGUGCGUGCUG---CUGUUcugCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 152380 0.67 0.991877
Target:  5'- -gACACGCugGACGACc--GCGcGCGc -3'
miRNA:   3'- gaUGUGCGugCUGCUGuucUGC-UGCa -5'
10964 3' -51.6 NC_002794.1 + 150648 0.67 0.993837
Target:  5'- -gGCACGCGCGuCGACcuGGGCuGGCc- -3'
miRNA:   3'- gaUGUGCGUGCuGCUGu-UCUG-CUGca -5'
10964 3' -51.6 NC_002794.1 + 149053 0.66 0.994663
Target:  5'- uCUACGCGCucguCGACGuCGAGcGgGugGUc -3'
miRNA:   3'- -GAUGUGCGu---GCUGCuGUUC-UgCugCA- -5'
10964 3' -51.6 NC_002794.1 + 147675 0.66 0.997122
Target:  5'- cCUGCucGCGCuCGAgGACccGGCGGCGa -3'
miRNA:   3'- -GAUG--UGCGuGCUgCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 147467 0.73 0.882809
Target:  5'- aCUACGCGCGCGACGACucgcuguucGAGcUGGCc- -3'
miRNA:   3'- -GAUGUGCGUGCUGCUG---------UUCuGCUGca -5'
10964 3' -51.6 NC_002794.1 + 147432 0.68 0.982949
Target:  5'- gCUGC-UGCugGACGGCuacGGGCG-CGUg -3'
miRNA:   3'- -GAUGuGCGugCUGCUGu--UCUGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 144451 0.67 0.992911
Target:  5'- gUGCGCGCACcugcGCGACugccCGACGUu -3'
miRNA:   3'- gAUGUGCGUGc---UGCUGuucuGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.