miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 143463 0.7 0.950013
Target:  5'- --cCGCGCGCGAUGAaCGgcuggcAGACGAUGUc -3'
miRNA:   3'- gauGUGCGUGCUGCU-GU------UCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 143068 0.66 0.994663
Target:  5'- -aGCGCcCGCGGCGGCAgacguAGugGAgGUu -3'
miRNA:   3'- gaUGUGcGUGCUGCUGU-----UCugCUgCA- -5'
10964 3' -51.6 NC_002794.1 + 142486 0.7 0.950013
Target:  5'- -gACGCGUGCGGCGccgGCA--GCGACGUg -3'
miRNA:   3'- gaUGUGCGUGCUGC---UGUucUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 142306 0.7 0.953678
Target:  5'- gUACAgGUggcggagGCGGCGGCGcAGGCGGCGg -3'
miRNA:   3'- gAUGUgCG-------UGCUGCUGU-UCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 141305 0.7 0.94572
Target:  5'- -gGCGCGCcgGCGACGGCAc--CGGCGUc -3'
miRNA:   3'- gaUGUGCG--UGCUGCUGUucuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 141098 0.68 0.978735
Target:  5'- -aACugGCGCGACGGuCGugGGACGAa-- -3'
miRNA:   3'- gaUGugCGUGCUGCU-GU--UCUGCUgca -5'
10964 3' -51.6 NC_002794.1 + 140099 0.69 0.964899
Target:  5'- --cCAUGguCGGCGGCGAucGACGGCGg -3'
miRNA:   3'- gauGUGCguGCUGCUGUU--CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 139737 0.67 0.991877
Target:  5'- -aGCACGC-CGACGgucaACAGGuuGGCGa -3'
miRNA:   3'- gaUGUGCGuGCUGC----UGUUCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 139445 0.69 0.968071
Target:  5'- -cGCGCGCGcCGAuCGGCAGGuCGuCGUg -3'
miRNA:   3'- gaUGUGCGU-GCU-GCUGUUCuGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 139111 0.73 0.853049
Target:  5'- -gGCACGaCGCgGGCGAUcacgGAGACGGCGUc -3'
miRNA:   3'- gaUGUGC-GUG-CUGCUG----UUCUGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 137869 0.69 0.973795
Target:  5'- -cACAUGUGCGGCGuCuGGugGGCGa -3'
miRNA:   3'- gaUGUGCGUGCUGCuGuUCugCUGCa -5'
10964 3' -51.6 NC_002794.1 + 133824 0.67 0.990728
Target:  5'- uCUACGCGUACGAUcGCuuggAAGACG-CGg -3'
miRNA:   3'- -GAUGUGCGUGCUGcUG----UUCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 132184 0.66 0.994663
Target:  5'- aCUAgACGCucCGACuggggGACGGGuGCGACGUc -3'
miRNA:   3'- -GAUgUGCGu-GCUG-----CUGUUC-UGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 131191 0.73 0.868355
Target:  5'- -gACA-GCACGGCGcCGGGGCGGCGc -3'
miRNA:   3'- gaUGUgCGUGCUGCuGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 131045 0.68 0.980929
Target:  5'- gCUGC-CGCcgauguucguCGACGACGAGACGuuGUu -3'
miRNA:   3'- -GAUGuGCGu---------GCUGCUGUUCUGCugCA- -5'
10964 3' -51.6 NC_002794.1 + 130446 0.66 0.996047
Target:  5'- -gGCGuccgUGUugGGCGGCGAGGCGcugGCGg -3'
miRNA:   3'- gaUGU----GCGugCUGCUGUUCUGC---UGCa -5'
10964 3' -51.6 NC_002794.1 + 130342 0.68 0.9865
Target:  5'- -aAgGCG-GCGACGACGAcgccGACGACGa -3'
miRNA:   3'- gaUgUGCgUGCUGCUGUU----CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 129916 0.71 0.925639
Target:  5'- -aGCACGCGauucgccaggccgUGGCGACGGcGGCGGCGg -3'
miRNA:   3'- gaUGUGCGU-------------GCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 129047 0.66 0.995923
Target:  5'- uCUGCggucgugGCGCGCGACGgugugucGCGgcuGGCGGCGg -3'
miRNA:   3'- -GAUG-------UGCGUGCUGC-------UGUu--CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 128585 0.66 0.996619
Target:  5'- gUACACGUuCG-CGACccuGAGGCGGCa- -3'
miRNA:   3'- gAUGUGCGuGCuGCUG---UUCUGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.