miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 3' -51.6 NC_002794.1 + 53761 0.66 0.996047
Target:  5'- -cGC-CGCugcCGGCGGCGGGACGcccGCGa -3'
miRNA:   3'- gaUGuGCGu--GCUGCUGUUCUGC---UGCa -5'
10964 3' -51.6 NC_002794.1 + 46314 0.66 0.996565
Target:  5'- -aGCGCG-GCGGCGACGgcgccgucgccgcGGACGGCu- -3'
miRNA:   3'- gaUGUGCgUGCUGCUGU-------------UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 53549 0.66 0.995397
Target:  5'- -cGCACaGCcCGugGACGuAGACGGCc- -3'
miRNA:   3'- gaUGUG-CGuGCugCUGU-UCUGCUGca -5'
10964 3' -51.6 NC_002794.1 + 101429 0.66 0.995397
Target:  5'- -gGC-UGCGCGACGAUccgGGGACGcCGg -3'
miRNA:   3'- gaUGuGCGUGCUGCUG---UUCUGCuGCa -5'
10964 3' -51.6 NC_002794.1 + 187659 0.66 0.994663
Target:  5'- cCU-CGCGgucCACGACGAUcGGGCGAUGc -3'
miRNA:   3'- -GAuGUGC---GUGCUGCUGuUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 90280 0.66 0.994663
Target:  5'- -cGCGCGCGCGGuCGAgCucGcCGACGUu -3'
miRNA:   3'- gaUGUGCGUGCU-GCU-GuuCuGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 152640 0.66 0.994663
Target:  5'- -gGCgGCGUuCGAgCGGCGAGACGuCGUg -3'
miRNA:   3'- gaUG-UGCGuGCU-GCUGUUCUGCuGCA- -5'
10964 3' -51.6 NC_002794.1 + 132184 0.66 0.994663
Target:  5'- aCUAgACGCucCGACuggggGACGGGuGCGACGUc -3'
miRNA:   3'- -GAUgUGCGu-GCUG-----CUGUUC-UGCUGCA- -5'
10964 3' -51.6 NC_002794.1 + 94152 0.66 0.994663
Target:  5'- -gGCgGCGCugGACgGugGGGGgGACGg -3'
miRNA:   3'- gaUG-UGCGugCUG-CugUUCUgCUGCa -5'
10964 3' -51.6 NC_002794.1 + 55177 0.66 0.994663
Target:  5'- ---aGCGgGCGACu-CGAGGCGGCGg -3'
miRNA:   3'- gaugUGCgUGCUGcuGUUCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 127638 0.66 0.995397
Target:  5'- ---gACGC-CGACGAcCGAGAccCGACGg -3'
miRNA:   3'- gaugUGCGuGCUGCU-GUUCU--GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 21648 0.66 0.995397
Target:  5'- -aAgACGaagaaGCGGCGGCGGuGGCGGCGg -3'
miRNA:   3'- gaUgUGCg----UGCUGCUGUU-CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 130446 0.66 0.996047
Target:  5'- -gGCGuccgUGUugGGCGGCGAGGCGcugGCGg -3'
miRNA:   3'- gaUGU----GCGugCUGCUGUUCUGC---UGCa -5'
10964 3' -51.6 NC_002794.1 + 187476 0.66 0.996047
Target:  5'- -gGCGCGCGCcgggccGAgGACGAGGCcGCGc -3'
miRNA:   3'- gaUGUGCGUG------CUgCUGUUCUGcUGCa -5'
10964 3' -51.6 NC_002794.1 + 80583 0.66 0.996047
Target:  5'- -cGCACGgGCuGACgGACGAGAaccUGACGg -3'
miRNA:   3'- gaUGUGCgUG-CUG-CUGUUCU---GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 129047 0.66 0.995923
Target:  5'- uCUGCggucgugGCGCGCGACGgugugucGCGgcuGGCGGCGg -3'
miRNA:   3'- -GAUG-------UGCGUGCUGC-------UGUu--CUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 79953 0.66 0.995397
Target:  5'- aCUGCgagcucgugGCGUACGAccccCGGCucGGCGACGa -3'
miRNA:   3'- -GAUG---------UGCGUGCU----GCUGuuCUGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 103860 0.66 0.995397
Target:  5'- -gGC-CGC-CGcCGACGAGAgCGACGa -3'
miRNA:   3'- gaUGuGCGuGCuGCUGUUCU-GCUGCa -5'
10964 3' -51.6 NC_002794.1 + 126652 0.66 0.995397
Target:  5'- -gACGCGC-CGAgagacCGACGGGccGCGGCGa -3'
miRNA:   3'- gaUGUGCGuGCU-----GCUGUUC--UGCUGCa -5'
10964 3' -51.6 NC_002794.1 + 29909 0.66 0.995397
Target:  5'- -cACAgGgAcCGACGACGGGcaGCGACGa -3'
miRNA:   3'- gaUGUgCgU-GCUGCUGUUC--UGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.