miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 53967 0.66 0.735109
Target:  5'- gCGCGUcCGCUccGuCCGGCuGCCcCGCGCc -3'
miRNA:   3'- gGUGCA-GCGA--C-GGCCG-CGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 118678 0.66 0.735109
Target:  5'- cCCGCGgcCGCcGCCGGCGgCaGCGCccaggaGCGc -3'
miRNA:   3'- -GGUGCa-GCGaCGGCCGCgG-CGUG------CGC- -5'
10964 5' -62.7 NC_002794.1 + 185220 0.66 0.735109
Target:  5'- gCCGCGgagagUCGC-GCCGacCGCCGCGCaCGa -3'
miRNA:   3'- -GGUGC-----AGCGaCGGCc-GCGGCGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 131032 0.66 0.735109
Target:  5'- -uGCGgCGCgGCCGGCuGCCGC-CGa- -3'
miRNA:   3'- ggUGCaGCGaCGGCCG-CGGCGuGCgc -5'
10964 5' -62.7 NC_002794.1 + 138291 0.66 0.735109
Target:  5'- gCGgGUgGCgGCCuuGGC-CCGCACGCu -3'
miRNA:   3'- gGUgCAgCGaCGG--CCGcGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 181739 0.66 0.735109
Target:  5'- aCACG-CGCgagcgGCCGGCcagcCCGCugACGCc -3'
miRNA:   3'- gGUGCaGCGa----CGGCCGc---GGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 80222 0.66 0.734198
Target:  5'- gCCuCGcCGCacaCCGGCGCCGUcuuccucACGCa -3'
miRNA:   3'- -GGuGCaGCGac-GGCCGCGGCG-------UGCGc -5'
10964 5' -62.7 NC_002794.1 + 180266 0.66 0.731462
Target:  5'- uCCGCuUCGCcggucuccucgcgGCCcGCGCCGC-CGCa -3'
miRNA:   3'- -GGUGcAGCGa------------CGGcCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 38432 0.66 0.726886
Target:  5'- uCCAUGgcgGCgggccggacugaggaGCCGGCGCgGC-CGCGg -3'
miRNA:   3'- -GGUGCag-CGa--------------CGGCCGCGgCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 36772 0.66 0.725969
Target:  5'- gCCACccaGCUguaGCCGGcCGCCGUguACGCc -3'
miRNA:   3'- -GGUGcagCGA---CGGCC-GCGGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 130393 0.66 0.725969
Target:  5'- gCCGCcUgGCUGUCGGaCGCCGCGa--- -3'
miRNA:   3'- -GGUGcAgCGACGGCC-GCGGCGUgcgc -5'
10964 5' -62.7 NC_002794.1 + 90222 0.66 0.725969
Target:  5'- gCCGCGcCGgaGCCccgccuguGGuCcCCGCGCGCGu -3'
miRNA:   3'- -GGUGCaGCgaCGG--------CC-GcGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 68827 0.66 0.725969
Target:  5'- aCgGCGaCGCcGCCGGCGCU---CGCGg -3'
miRNA:   3'- -GgUGCaGCGaCGGCCGCGGcguGCGC- -5'
10964 5' -62.7 NC_002794.1 + 135477 0.66 0.725969
Target:  5'- aCgACGaCGCcGCCGuCGaCGCGCGCGg -3'
miRNA:   3'- -GgUGCaGCGaCGGCcGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 194759 0.66 0.725969
Target:  5'- cCCACGgCGaCUGCuccgagaaCGGCcgGCaCGCGCGCa -3'
miRNA:   3'- -GGUGCaGC-GACG--------GCCG--CG-GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 190461 0.66 0.725969
Target:  5'- gCgGCGUCGC-GCCcgacgcccacgGGUGCCcCACGCc -3'
miRNA:   3'- -GgUGCAGCGaCGG-----------CCGCGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 149235 0.66 0.725969
Target:  5'- gCCGcCGcCGUcGCCGGgGUCGCgGCGCc -3'
miRNA:   3'- -GGU-GCaGCGaCGGCCgCGGCG-UGCGc -5'
10964 5' -62.7 NC_002794.1 + 31384 0.66 0.725969
Target:  5'- cCC-CGUCGUcGgCGGCcCCGC-CGCGc -3'
miRNA:   3'- -GGuGCAGCGaCgGCCGcGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 90371 0.66 0.725969
Target:  5'- gCGCGU-GCaggGCCGGgucuCGCCGUcCGCGa -3'
miRNA:   3'- gGUGCAgCGa--CGGCC----GCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 189899 0.66 0.725969
Target:  5'- cCCGcCGUCaGCgccGCCGcGCGaCCGCcCGCu -3'
miRNA:   3'- -GGU-GCAG-CGa--CGGC-CGC-GGCGuGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.