Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10964 | 5' | -62.7 | NC_002794.1 | + | 60042 | 0.66 | 0.725051 |
Target: 5'- gCCGucUCGCUGCucaccuuCGGcCGCCGCACcGUGc -3' miRNA: 3'- -GGUgcAGCGACG-------GCC-GCGGCGUG-CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 36772 | 0.66 | 0.725969 |
Target: 5'- gCCACccaGCUguaGCCGGcCGCCGUguACGCc -3' miRNA: 3'- -GGUGcagCGA---CGGCC-GCGGCG--UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 38432 | 0.66 | 0.726886 |
Target: 5'- uCCAUGgcgGCgggccggacugaggaGCCGGCGCgGC-CGCGg -3' miRNA: 3'- -GGUGCag-CGa--------------CGGCCGCGgCGuGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 80222 | 0.66 | 0.734198 |
Target: 5'- gCCuCGcCGCacaCCGGCGCCGUcuuccucACGCa -3' miRNA: 3'- -GGuGCaGCGac-GGCCGCGGCG-------UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 180266 | 0.66 | 0.731462 |
Target: 5'- uCCGCuUCGCcggucuccucgcgGCCcGCGCCGC-CGCa -3' miRNA: 3'- -GGUGcAGCGa------------CGGcCGCGGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 181739 | 0.66 | 0.735109 |
Target: 5'- aCACG-CGCgagcgGCCGGCcagcCCGCugACGCc -3' miRNA: 3'- gGUGCaGCGa----CGGCCGc---GGCG--UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 138291 | 0.66 | 0.735109 |
Target: 5'- gCGgGUgGCgGCCuuGGC-CCGCACGCu -3' miRNA: 3'- gGUgCAgCGaCGG--CCGcGGCGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 131032 | 0.66 | 0.735109 |
Target: 5'- -uGCGgCGCgGCCGGCuGCCGC-CGa- -3' miRNA: 3'- ggUGCaGCGaCGGCCG-CGGCGuGCgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 185220 | 0.66 | 0.735109 |
Target: 5'- gCCGCGgagagUCGC-GCCGacCGCCGCGCaCGa -3' miRNA: 3'- -GGUGC-----AGCGaCGGCc-GCGGCGUGcGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 118678 | 0.66 | 0.735109 |
Target: 5'- cCCGCGgcCGCcGCCGGCGgCaGCGCccaggaGCGc -3' miRNA: 3'- -GGUGCa-GCGaCGGCCGCgG-CGUG------CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 189899 | 0.66 | 0.725969 |
Target: 5'- cCCGcCGUCaGCgccGCCGcGCGaCCGCcCGCu -3' miRNA: 3'- -GGU-GCAG-CGa--CGGC-CGC-GGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 90371 | 0.66 | 0.725969 |
Target: 5'- gCGCGU-GCaggGCCGGgucuCGCCGUcCGCGa -3' miRNA: 3'- gGUGCAgCGa--CGGCC----GCGGCGuGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 130393 | 0.66 | 0.725969 |
Target: 5'- gCCGCcUgGCUGUCGGaCGCCGCGa--- -3' miRNA: 3'- -GGUGcAgCGACGGCC-GCGGCGUgcgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 90222 | 0.66 | 0.725969 |
Target: 5'- gCCGCGcCGgaGCCccgccuguGGuCcCCGCGCGCGu -3' miRNA: 3'- -GGUGCaGCgaCGG--------CC-GcGGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 68827 | 0.66 | 0.725969 |
Target: 5'- aCgGCGaCGCcGCCGGCGCU---CGCGg -3' miRNA: 3'- -GgUGCaGCGaCGGCCGCGGcguGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 135477 | 0.66 | 0.725969 |
Target: 5'- aCgACGaCGCcGCCGuCGaCGCGCGCGg -3' miRNA: 3'- -GgUGCaGCGaCGGCcGCgGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 194759 | 0.66 | 0.725969 |
Target: 5'- cCCACGgCGaCUGCuccgagaaCGGCcgGCaCGCGCGCa -3' miRNA: 3'- -GGUGCaGC-GACG--------GCCG--CG-GCGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 190461 | 0.66 | 0.725969 |
Target: 5'- gCgGCGUCGC-GCCcgacgcccacgGGUGCCcCACGCc -3' miRNA: 3'- -GgUGCAGCGaCGG-----------CCGCGGcGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 149235 | 0.66 | 0.725969 |
Target: 5'- gCCGcCGcCGUcGCCGGgGUCGCgGCGCc -3' miRNA: 3'- -GGU-GCaGCGaCGGCCgCGGCG-UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 31384 | 0.66 | 0.725969 |
Target: 5'- cCC-CGUCGUcGgCGGCcCCGC-CGCGc -3' miRNA: 3'- -GGuGCAGCGaCgGCCGcGGCGuGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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