miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 59902 0.66 0.716759
Target:  5'- gCCGCGUgCGCaGCgacaugGGCGCC-CGCGUGc -3'
miRNA:   3'- -GGUGCA-GCGaCGg-----CCGCGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 41859 0.66 0.716759
Target:  5'- cCCAgGcCGCcgggcaggGCCgGGCGCUGcCACGCc -3'
miRNA:   3'- -GGUgCaGCGa-------CGG-CCGCGGC-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 130393 0.66 0.725969
Target:  5'- gCCGCcUgGCUGUCGGaCGCCGCGa--- -3'
miRNA:   3'- -GGUGcAgCGACGGCC-GCGGCGUgcgc -5'
10964 5' -62.7 NC_002794.1 + 36772 0.66 0.725969
Target:  5'- gCCACccaGCUguaGCCGGcCGCCGUguACGCc -3'
miRNA:   3'- -GGUGcagCGA---CGGCC-GCGGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 60042 0.66 0.725051
Target:  5'- gCCGucUCGCUGCucaccuuCGGcCGCCGCACcGUGc -3'
miRNA:   3'- -GGUgcAGCGACG-------GCC-GCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 191487 0.66 0.723213
Target:  5'- gCCACGggcgaUCGUccgccaccgagaggUGCCaGCGCCGgGCGuCGg -3'
miRNA:   3'- -GGUGC-----AGCG--------------ACGGcCGCGGCgUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 23689 0.66 0.725051
Target:  5'- aCACG-CGCcGCCGaggccccgaaGCGucccgaaCCGCGCGCGg -3'
miRNA:   3'- gGUGCaGCGaCGGC----------CGC-------GGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 84929 0.66 0.716759
Target:  5'- gCGCGgagCGCUccccacacGCgGaGCGCCcccgGCACGCGg -3'
miRNA:   3'- gGUGCa--GCGA--------CGgC-CGCGG----CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 190149 0.66 0.720451
Target:  5'- aCGCGUacUGCUGgCGGCGgcucuccucgaacacCCGC-CGCGc -3'
miRNA:   3'- gGUGCA--GCGACgGCCGC---------------GGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 32671 0.67 0.667078
Target:  5'- cCC-CGUCGUccGCCaaccguccuccggaGGCGUCGCGgGCGa -3'
miRNA:   3'- -GGuGCAGCGa-CGG--------------CCGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 126375 0.67 0.669919
Target:  5'- gCUGCGUgGgcgccggggcCUGCgCGGCGgCGUGCGCGg -3'
miRNA:   3'- -GGUGCAgC----------GACG-GCCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 49225 0.67 0.668972
Target:  5'- gCCGCGcCGCcaacaggGCCgucgacgGGCGCC-CGCGCa -3'
miRNA:   3'- -GGUGCaGCGa------CGG-------CCGCGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 47749 0.67 0.669919
Target:  5'- uCCACGUgGCgGCCguGGuCGCgGCacaACGCGc -3'
miRNA:   3'- -GGUGCAgCGaCGG--CC-GCGgCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 38497 0.67 0.669919
Target:  5'- gCGCGgcgGC-GCCGGuCGCCGC-CGCc -3'
miRNA:   3'- gGUGCag-CGaCGGCC-GCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 184013 0.67 0.669919
Target:  5'- uCCACcaUCGCcgGCCgccacGGCaCCGCGCGCa -3'
miRNA:   3'- -GGUGc-AGCGa-CGG-----CCGcGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 127181 0.67 0.669919
Target:  5'- gCCGCaGUCGUcGCCGcG-GCCGCAgcCGCa -3'
miRNA:   3'- -GGUG-CAGCGaCGGC-CgCGGCGU--GCGc -5'
10964 5' -62.7 NC_002794.1 + 59288 0.67 0.669919
Target:  5'- uCCGC-UCGCcGCuCGaCGCCGCGCaGCGc -3'
miRNA:   3'- -GGUGcAGCGaCG-GCcGCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 187908 0.67 0.669919
Target:  5'- gCCGC-UCGCccGCCGGgcccCGCCGCGaccguCGCGu -3'
miRNA:   3'- -GGUGcAGCGa-CGGCC----GCGGCGU-----GCGC- -5'
10964 5' -62.7 NC_002794.1 + 67388 0.67 0.669919
Target:  5'- aCGCGUCgGCgccagcGUCGGCGCCaGCgucgGCGCc -3'
miRNA:   3'- gGUGCAG-CGa-----CGGCCGCGG-CG----UGCGc -5'
10964 5' -62.7 NC_002794.1 + 107291 0.67 0.660443
Target:  5'- gCCcCGUCGUcgacGCUccucgcgggGGCGCCGUccGCGCGg -3'
miRNA:   3'- -GGuGCAGCGa---CGG---------CCGCGGCG--UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.