miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 149374 0.67 0.647145
Target:  5'- uCCGCcgagaauaaaacCGCUGaCCGGCaacgucGCCGCGCGUGu -3'
miRNA:   3'- -GGUGca----------GCGAC-GGCCG------CGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 183684 0.67 0.641438
Target:  5'- aCGgGUCGagcGCC--CGCCGCGCGCGg -3'
miRNA:   3'- gGUgCAGCga-CGGccGCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 180901 0.67 0.647145
Target:  5'- gCCGCGgacucggcCGCggucucGCCGGCGCCGUcggaggucggucuCGCGu -3'
miRNA:   3'- -GGUGCa-------GCGa-----CGGCCGCGGCGu------------GCGC- -5'
10964 5' -62.7 NC_002794.1 + 153848 0.67 0.641438
Target:  5'- gCGCGUUGCcccccgccgUGCCGGCggaauuccuGCCGUucguccACGCGc -3'
miRNA:   3'- gGUGCAGCG---------ACGGCCG---------CGGCG------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 41239 0.67 0.660443
Target:  5'- cCCACGcCGCggccgccgacGCCGGCGgcCCGUcguCGCGc -3'
miRNA:   3'- -GGUGCaGCGa---------CGGCCGC--GGCGu--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 100092 0.67 0.660443
Target:  5'- uCCACGUcCGCgUG-CGGCGCgUGCA-GCGg -3'
miRNA:   3'- -GGUGCA-GCG-ACgGCCGCG-GCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 67388 0.67 0.669919
Target:  5'- aCGCGUCgGCgccagcGUCGGCGCCaGCgucgGCGCc -3'
miRNA:   3'- gGUGCAG-CGa-----CGGCCGCGG-CG----UGCGc -5'
10964 5' -62.7 NC_002794.1 + 187908 0.67 0.669919
Target:  5'- gCCGC-UCGCccGCCGGgcccCGCCGCGaccguCGCGu -3'
miRNA:   3'- -GGUGcAGCGa-CGGCC----GCGGCGU-----GCGC- -5'
10964 5' -62.7 NC_002794.1 + 59288 0.67 0.669919
Target:  5'- uCCGC-UCGCcGCuCGaCGCCGCGCaGCGc -3'
miRNA:   3'- -GGUGcAGCGaCG-GCcGCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 127181 0.67 0.669919
Target:  5'- gCCGCaGUCGUcGCCGcG-GCCGCAgcCGCa -3'
miRNA:   3'- -GGUG-CAGCGaCGGC-CgCGGCGU--GCGc -5'
10964 5' -62.7 NC_002794.1 + 184013 0.67 0.669919
Target:  5'- uCCACcaUCGCcgGCCgccacGGCaCCGCGCGCa -3'
miRNA:   3'- -GGUGc-AGCGa-CGG-----CCGcGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 38497 0.67 0.669919
Target:  5'- gCGCGgcgGC-GCCGGuCGCCGC-CGCc -3'
miRNA:   3'- gGUGCag-CGaCGGCC-GCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 47749 0.67 0.669919
Target:  5'- uCCACGUgGCgGCCguGGuCGCgGCacaACGCGc -3'
miRNA:   3'- -GGUGCAgCGaCGG--CC-GCGgCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 49225 0.67 0.668972
Target:  5'- gCCGCGcCGCcaacaggGCCgucgacgGGCGCC-CGCGCa -3'
miRNA:   3'- -GGUGCaGCGa------CGG-------CCGCGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 126375 0.67 0.669919
Target:  5'- gCUGCGUgGgcgccggggcCUGCgCGGCGgCGUGCGCGg -3'
miRNA:   3'- -GGUGCAgC----------GACG-GCCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 32671 0.67 0.667078
Target:  5'- cCC-CGUCGUccGCCaaccguccuccggaGGCGUCGCGgGCGa -3'
miRNA:   3'- -GGuGCAGCGa-CGG--------------CCGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 107291 0.67 0.660443
Target:  5'- gCCcCGUCGUcgacGCUccucgcgggGGCGCCGUccGCGCGg -3'
miRNA:   3'- -GGuGCAGCGa---CGG---------CCGCGGCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 192554 0.67 0.660443
Target:  5'- gCC-CGUCGUaG-CGGCaGgCGCACGCGa -3'
miRNA:   3'- -GGuGCAGCGaCgGCCG-CgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 79675 0.67 0.664236
Target:  5'- aCGCG-CGCUGCUuccucgagcagcucgGGcCGCCGCuCGUGu -3'
miRNA:   3'- gGUGCaGCGACGG---------------CC-GCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 116919 0.67 0.660443
Target:  5'- cCgGCGUCgGCU-CCGGCGUCGUcgGCGUc -3'
miRNA:   3'- -GgUGCAG-CGAcGGCCGCGGCG--UGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.