miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 72924 0.85 0.059332
Target:  5'- gCCGcCGUCGgaGCCGGCGuCCGCGCGCc -3'
miRNA:   3'- -GGU-GCAGCgaCGGCCGC-GGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 82983 0.83 0.074293
Target:  5'- gUCGCGaCGCUGaacCUGGCGCCGCACGCGc -3'
miRNA:   3'- -GGUGCaGCGAC---GGCCGCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 34851 0.81 0.107557
Target:  5'- -gGCGUCGgaGCgGGCGCCGCGgGCGc -3'
miRNA:   3'- ggUGCAGCgaCGgCCGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 67839 0.79 0.137039
Target:  5'- cCCGcCGUCGC--CCGGCGCCGCcGCGCGu -3'
miRNA:   3'- -GGU-GCAGCGacGGCCGCGGCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 107178 0.79 0.140365
Target:  5'- aCGCGgCGgaGCCGGCGCCGC-CGCc -3'
miRNA:   3'- gGUGCaGCgaCGGCCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 190196 0.79 0.137039
Target:  5'- uCCACG-CGCU-CCaGCGCCGCGCGCa -3'
miRNA:   3'- -GGUGCaGCGAcGGcCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 61872 0.79 0.137039
Target:  5'- gCCGCG-CGCcgucGUCGGCGCCGCGCgGCGa -3'
miRNA:   3'- -GGUGCaGCGa---CGGCCGCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 72166 0.78 0.154422
Target:  5'- aCACG-CGCUGCCGGUagGCCGCgaACGCu -3'
miRNA:   3'- gGUGCaGCGACGGCCG--CGGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 153400 0.78 0.169743
Target:  5'- aUCGCGa-GCUGUCGcgaGCGCCGCGCGCGg -3'
miRNA:   3'- -GGUGCagCGACGGC---CGCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 31903 0.78 0.155527
Target:  5'- gCGCGUCGCUgaugagcGCCGacaggacguccagccGCGCCGCACGCu -3'
miRNA:   3'- gGUGCAGCGA-------CGGC---------------CGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 128256 0.77 0.195273
Target:  5'- gUCugGUCGCgGUCGGgGCCGaGCGCGg -3'
miRNA:   3'- -GGugCAGCGaCGGCCgCGGCgUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 183611 0.77 0.190796
Target:  5'- gCCGCG-CGCgGCCGGCGCCccCGCGCc -3'
miRNA:   3'- -GGUGCaGCGaCGGCCGCGGc-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 19303 0.77 0.201694
Target:  5'- gUCGCGUCGCUgaccgcccacgccgcGCUGGCGacCCGCGCGCc -3'
miRNA:   3'- -GGUGCAGCGA---------------CGGCCGC--GGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 58544 0.77 0.182113
Target:  5'- gCCGCGgcgcgcgCGCUGCUGGCGC-GCuGCGCGa -3'
miRNA:   3'- -GGUGCa------GCGACGGCCGCGgCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 102496 0.77 0.199841
Target:  5'- uCCACGUCcuguugcaGCgGCUGGCG-CGCGCGCGg -3'
miRNA:   3'- -GGUGCAG--------CGaCGGCCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 53756 0.76 0.214107
Target:  5'- gCCGcCGcCGCUGCCGGCGgcgggacgcCCGCgACGCGc -3'
miRNA:   3'- -GGU-GCaGCGACGGCCGC---------GGCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 111740 0.76 0.214107
Target:  5'- aCGCGcUCGUcgaGCUGGCGCCGCGCgGCGc -3'
miRNA:   3'- gGUGC-AGCGa--CGGCCGCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 75579 0.76 0.219053
Target:  5'- uCCGCGcagUgGCUGCCGGcCGCCGCGCa-- -3'
miRNA:   3'- -GGUGC---AgCGACGGCC-GCGGCGUGcgc -5'
10964 5' -62.7 NC_002794.1 + 114638 0.76 0.229239
Target:  5'- gCGCGgagcucgaGCUGCCGGUGCuguuCGCGCGCGc -3'
miRNA:   3'- gGUGCag------CGACGGCCGCG----GCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 92256 0.76 0.224097
Target:  5'- gCgGCGUCGCUGgCGGCGgCGCcgggcgagGCGCGc -3'
miRNA:   3'- -GgUGCAGCGACgGCCGCgGCG--------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.