Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10964 | 5' | -62.7 | NC_002794.1 | + | 111740 | 0.76 | 0.214107 |
Target: 5'- aCGCGcUCGUcgaGCUGGCGCCGCGCgGCGc -3' miRNA: 3'- gGUGC-AGCGa--CGGCCGCGGCGUG-CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 185336 | 0.76 | 0.209257 |
Target: 5'- cCCGCGUCGaCcGCuCGcGCGCCGC-CGCGa -3' miRNA: 3'- -GGUGCAGC-GaCG-GC-CGCGGCGuGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 92256 | 0.76 | 0.224097 |
Target: 5'- gCgGCGUCGCUGgCGGCGgCGCcgggcgagGCGCGc -3' miRNA: 3'- -GgUGCAGCGACgGCCGCgGCG--------UGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 131370 | 0.75 | 0.256456 |
Target: 5'- aCCGCuUCGCccgugGUCGGCGCCGCGCcCGu -3' miRNA: 3'- -GGUGcAGCGa----CGGCCGCGGCGUGcGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 186292 | 0.75 | 0.256456 |
Target: 5'- aCCGCGgccagGCgGCCGGuCGCCGCgGCGCGc -3' miRNA: 3'- -GGUGCag---CGaCGGCC-GCGGCG-UGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 871 | 0.75 | 0.262207 |
Target: 5'- cCCGCGagGCgGUCGGCG-UGCGCGCGg -3' miRNA: 3'- -GGUGCagCGaCGGCCGCgGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 53247 | 0.75 | 0.23448 |
Target: 5'- gCC-CGcCGC-GCCGGCGUCGCcGCGCGa -3' miRNA: 3'- -GGuGCaGCGaCGGCCGCGGCG-UGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 48599 | 0.75 | 0.262207 |
Target: 5'- gCGCGUCGCcGUCGGCGUCgGCcucagACGCGg -3' miRNA: 3'- gGUGCAGCGaCGGCCGCGG-CG-----UGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 122200 | 0.75 | 0.245264 |
Target: 5'- aCGCGgcgaagCGgUGCCGGCGCCGCuacgauaaGCGg -3' miRNA: 3'- gGUGCa-----GCgACGGCCGCGGCGug------CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 58861 | 0.74 | 0.292543 |
Target: 5'- gCuCGUCGCcGaCCGGCaGCCGUGCGCGc -3' miRNA: 3'- gGuGCAGCGaC-GGCCG-CGGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 57153 | 0.74 | 0.274024 |
Target: 5'- cUCACGcUGCUGCgcaaGGCGCCGC-CGCa -3' miRNA: 3'- -GGUGCaGCGACGg---CCGCGGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 12168 | 0.74 | 0.268063 |
Target: 5'- cCCGgauCGUCGCcGCCGaCGCCGC-CGCGg -3' miRNA: 3'- -GGU---GCAGCGaCGGCcGCGGCGuGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 188327 | 0.74 | 0.305424 |
Target: 5'- uCCuCGUCGCcGCCgccggcGGCGCCGuCGCGCc -3' miRNA: 3'- -GGuGCAGCGaCGG------CCGCGGC-GUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 156381 | 0.74 | 0.272225 |
Target: 5'- aCACGgggucuucuucuagaGCgGCCGGCGCCGCGgcCGCGg -3' miRNA: 3'- gGUGCag-------------CGaCGGCCGCGGCGU--GCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 192422 | 0.74 | 0.268063 |
Target: 5'- gCCGCGacgggucCGCgGCCGGCGCguCGCGCGCc -3' miRNA: 3'- -GGUGCa------GCGaCGGCCGCG--GCGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 146972 | 0.74 | 0.286264 |
Target: 5'- aCCGCcuGUCGCgagGUCGGCGCCGCcggccgACGuCGg -3' miRNA: 3'- -GGUG--CAGCGa--CGGCCGCGGCG------UGC-GC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 137569 | 0.74 | 0.280091 |
Target: 5'- gCCGcCGUCGCcGCCGGgGCCGgAgUGCGg -3' miRNA: 3'- -GGU-GCAGCGaCGGCCgCGGCgU-GCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 19513 | 0.74 | 0.305424 |
Target: 5'- gUCGCGcCGCUcggagcGCCGGCGCgGCGCGg- -3' miRNA: 3'- -GGUGCaGCGA------CGGCCGCGgCGUGCgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 114734 | 0.74 | 0.280091 |
Target: 5'- uCCGgguuCGUCGa-GCCGGCGCCGCcCGCc -3' miRNA: 3'- -GGU----GCAGCgaCGGCCGCGGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 127530 | 0.74 | 0.29893 |
Target: 5'- gCCGCGaUC-CUGCUGGCGCUGUugGUc -3' miRNA: 3'- -GGUGC-AGcGACGGCCGCGGCGugCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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