miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 92256 0.76 0.224097
Target:  5'- gCgGCGUCGCUGgCGGCGgCGCcgggcgagGCGCGc -3'
miRNA:   3'- -GgUGCAGCGACgGCCGCgGCG--------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 42473 0.76 0.229239
Target:  5'- uCCAUGUCGCgcgcGCCGGgGCCGa--GCGg -3'
miRNA:   3'- -GGUGCAGCGa---CGGCCgCGGCgugCGC- -5'
10964 5' -62.7 NC_002794.1 + 114638 0.76 0.229239
Target:  5'- gCGCGgagcucgaGCUGCCGGUGCuguuCGCGCGCGc -3'
miRNA:   3'- gGUGCag------CGACGGCCGCG----GCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 53247 0.75 0.23448
Target:  5'- gCC-CGcCGC-GCCGGCGUCGCcGCGCGa -3'
miRNA:   3'- -GGuGCaGCGaCGGCCGCGGCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 122200 0.75 0.245264
Target:  5'- aCGCGgcgaagCGgUGCCGGCGCCGCuacgauaaGCGg -3'
miRNA:   3'- gGUGCa-----GCgACGGCCGCGGCGug------CGC- -5'
10964 5' -62.7 NC_002794.1 + 131370 0.75 0.256456
Target:  5'- aCCGCuUCGCccgugGUCGGCGCCGCGCcCGu -3'
miRNA:   3'- -GGUGcAGCGa----CGGCCGCGGCGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 186292 0.75 0.256456
Target:  5'- aCCGCGgccagGCgGCCGGuCGCCGCgGCGCGc -3'
miRNA:   3'- -GGUGCag---CGaCGGCC-GCGGCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 48599 0.75 0.262207
Target:  5'- gCGCGUCGCcGUCGGCGUCgGCcucagACGCGg -3'
miRNA:   3'- gGUGCAGCGaCGGCCGCGG-CG-----UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 871 0.75 0.262207
Target:  5'- cCCGCGagGCgGUCGGCG-UGCGCGCGg -3'
miRNA:   3'- -GGUGCagCGaCGGCCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 58455 0.74 0.268063
Target:  5'- gCCugGcCGC-GCUGGCGCUGCACGa- -3'
miRNA:   3'- -GGugCaGCGaCGGCCGCGGCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 192422 0.74 0.268063
Target:  5'- gCCGCGacgggucCGCgGCCGGCGCguCGCGCGCc -3'
miRNA:   3'- -GGUGCa------GCGaCGGCCGCG--GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 12168 0.74 0.268063
Target:  5'- cCCGgauCGUCGCcGCCGaCGCCGC-CGCGg -3'
miRNA:   3'- -GGU---GCAGCGaCGGCcGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 156381 0.74 0.272225
Target:  5'- aCACGgggucuucuucuagaGCgGCCGGCGCCGCGgcCGCGg -3'
miRNA:   3'- gGUGCag-------------CGaCGGCCGCGGCGU--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 57153 0.74 0.274024
Target:  5'- cUCACGcUGCUGCgcaaGGCGCCGC-CGCa -3'
miRNA:   3'- -GGUGCaGCGACGg---CCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 93711 0.74 0.274024
Target:  5'- gCCugGUCGacCUGCUGuuGCGCCGCuCGCGc -3'
miRNA:   3'- -GGugCAGC--GACGGC--CGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 67040 0.74 0.274024
Target:  5'- gCCGCGUCGCggacCCGGCGuCCGUggGCu -3'
miRNA:   3'- -GGUGCAGCGac--GGCCGC-GGCGugCGc -5'
10964 5' -62.7 NC_002794.1 + 114734 0.74 0.280091
Target:  5'- uCCGgguuCGUCGa-GCCGGCGCCGCcCGCc -3'
miRNA:   3'- -GGU----GCAGCgaCGGCCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 137569 0.74 0.280091
Target:  5'- gCCGcCGUCGCcGCCGGgGCCGgAgUGCGg -3'
miRNA:   3'- -GGU-GCAGCGaCGGCCgCGGCgU-GCGC- -5'
10964 5' -62.7 NC_002794.1 + 146972 0.74 0.286264
Target:  5'- aCCGCcuGUCGCgagGUCGGCGCCGCcggccgACGuCGg -3'
miRNA:   3'- -GGUG--CAGCGa--CGGCCGCGGCG------UGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 58861 0.74 0.292543
Target:  5'- gCuCGUCGCcGaCCGGCaGCCGUGCGCGc -3'
miRNA:   3'- gGuGCAGCGaC-GGCCG-CGGCGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.