miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 127530 0.74 0.29893
Target:  5'- gCCGCGaUC-CUGCUGGCGCUGUugGUc -3'
miRNA:   3'- -GGUGC-AGcGACGGCCGCGGCGugCGc -5'
10964 5' -62.7 NC_002794.1 + 188327 0.74 0.305424
Target:  5'- uCCuCGUCGCcGCCgccggcGGCGCCGuCGCGCc -3'
miRNA:   3'- -GGuGCAGCGaCGG------CCGCGGC-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 19513 0.74 0.305424
Target:  5'- gUCGCGcCGCUcggagcGCCGGCGCgGCGCGg- -3'
miRNA:   3'- -GGUGCaGCGA------CGGCCGCGgCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 49012 0.73 0.312026
Target:  5'- cCCGCGcCGCggcgGCCgcGGCGUCGUccgGCGCGg -3'
miRNA:   3'- -GGUGCaGCGa---CGG--CCGCGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 110317 0.73 0.312026
Target:  5'- uCCGC-UCGCcGCCGcGaCGCCGCGCGgGg -3'
miRNA:   3'- -GGUGcAGCGaCGGC-C-GCGGCGUGCgC- -5'
10964 5' -62.7 NC_002794.1 + 182998 0.73 0.318736
Target:  5'- gCGCuUCGCcGCgGGCGCCccGCGCGCGc -3'
miRNA:   3'- gGUGcAGCGaCGgCCGCGG--CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 111629 0.73 0.325553
Target:  5'- gCCGCGgcCGCcGCCggucgGGCGCCGCGgcCGCGg -3'
miRNA:   3'- -GGUGCa-GCGaCGG-----CCGCGGCGU--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 44717 0.73 0.325553
Target:  5'- aCCGCGgcgaCGUcgGCCGGCGCCGC-CGg- -3'
miRNA:   3'- -GGUGCa---GCGa-CGGCCGCGGCGuGCgc -5'
10964 5' -62.7 NC_002794.1 + 185752 0.73 0.325553
Target:  5'- aCGCGUCcaGCcGCCGGCGCgGC-CGCc -3'
miRNA:   3'- gGUGCAG--CGaCGGCCGCGgCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 47404 0.73 0.325553
Target:  5'- cCCgaaGcCGCcGUCGGCGCCGuCGCGCGg -3'
miRNA:   3'- -GGug-CaGCGaCGGCCGCGGC-GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 190660 0.73 0.325553
Target:  5'- aUCACGUCGCgcccGCC-GCGCCGCcgggucuccACGCa -3'
miRNA:   3'- -GGUGCAGCGa---CGGcCGCGGCG---------UGCGc -5'
10964 5' -62.7 NC_002794.1 + 141595 0.73 0.325553
Target:  5'- cCCGCGUCGCcgggcgGCuCGGCGaCCgGCuCGCGg -3'
miRNA:   3'- -GGUGCAGCGa-----CG-GCCGC-GG-CGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 185162 0.73 0.332479
Target:  5'- aCGCGUC-CUccGCCGGCGCgGCGCGg- -3'
miRNA:   3'- gGUGCAGcGA--CGGCCGCGgCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 122011 0.73 0.332479
Target:  5'- uCCACGUCGuCUucuUCGGCGCCGgGCGUc -3'
miRNA:   3'- -GGUGCAGC-GAc--GGCCGCGGCgUGCGc -5'
10964 5' -62.7 NC_002794.1 + 69015 0.73 0.332479
Target:  5'- uCCGCGUgCGCgacGCCGGCGCC-CuCGCc -3'
miRNA:   3'- -GGUGCA-GCGa--CGGCCGCGGcGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 93985 0.73 0.339511
Target:  5'- aCCGCGcucggCGCggacGCCGGCGCCgGCG-GCGg -3'
miRNA:   3'- -GGUGCa----GCGa---CGGCCGCGG-CGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 47952 0.73 0.339511
Target:  5'- gCGCGUCccgGC-GCCGGCugggcgaccGCCGCGCGCu -3'
miRNA:   3'- gGUGCAG---CGaCGGCCG---------CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 125341 0.73 0.346651
Target:  5'- gCCACGgCGCa-CCGGCaGCCGCugGCc -3'
miRNA:   3'- -GGUGCaGCGacGGCCG-CGGCGugCGc -5'
10964 5' -62.7 NC_002794.1 + 68973 0.73 0.346651
Target:  5'- uCCGCGggcCGCgacGCCGGCGUCG-ACGCu -3'
miRNA:   3'- -GGUGCa--GCGa--CGGCCGCGGCgUGCGc -5'
10964 5' -62.7 NC_002794.1 + 21449 0.73 0.346651
Target:  5'- cUCGCGUCGCU--CGGCGUCGC-CGUGa -3'
miRNA:   3'- -GGUGCAGCGAcgGCCGCGGCGuGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.