miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 194107 0.72 0.353898
Target:  5'- aCACGU-GCUG-CGGCaCCGCGCGCa -3'
miRNA:   3'- gGUGCAgCGACgGCCGcGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 35764 0.72 0.353898
Target:  5'- aCgACGUCGCggcaccgucGCCGGCGUCGUcuccgGCGUGa -3'
miRNA:   3'- -GgUGCAGCGa--------CGGCCGCGGCG-----UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 81789 0.72 0.361251
Target:  5'- uCCGCGagauuucCGCUGCCucaGCCGCGCGCa -3'
miRNA:   3'- -GGUGCa------GCGACGGccgCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 57391 0.72 0.361251
Target:  5'- cCUACGUCaccgGCU-CCGGCGCC-CGCGUGg -3'
miRNA:   3'- -GGUGCAG----CGAcGGCCGCGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 44008 0.72 0.361251
Target:  5'- gCACGgCGCgGCCGGCGuCCGCAgaccguCGCu -3'
miRNA:   3'- gGUGCaGCGaCGGCCGC-GGCGU------GCGc -5'
10964 5' -62.7 NC_002794.1 + 80036 0.72 0.36871
Target:  5'- aCCAC-UCGCcgacagUGCCGGCGCgaGC-CGCGg -3'
miRNA:   3'- -GGUGcAGCG------ACGGCCGCGg-CGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 184451 0.72 0.36871
Target:  5'- gCGCGcCGCUGCCGcccgcGgGCCGCGCGa- -3'
miRNA:   3'- gGUGCaGCGACGGC-----CgCGGCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 106965 0.72 0.36871
Target:  5'- aCGCGUCGCcucGCgCGGCgGCCGgCACgGCGg -3'
miRNA:   3'- gGUGCAGCGa--CG-GCCG-CGGC-GUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 124252 0.72 0.36871
Target:  5'- cCCGCG-CGCggguagucGCCGGCcaGCCGC-CGCGc -3'
miRNA:   3'- -GGUGCaGCGa-------CGGCCG--CGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 187743 0.72 0.371723
Target:  5'- gCAcCGUCGCcaucuccgaacgccGCCGGCGCCGguCGCc -3'
miRNA:   3'- gGU-GCAGCGa-------------CGGCCGCGGCguGCGc -5'
10964 5' -62.7 NC_002794.1 + 114447 0.72 0.376274
Target:  5'- gCACGUCGUggUGCUGuCGCCGCAgcCGCa -3'
miRNA:   3'- gGUGCAGCG--ACGGCcGCGGCGU--GCGc -5'
10964 5' -62.7 NC_002794.1 + 187444 0.72 0.38317
Target:  5'- gCCGCGcCGuCUGCCgccgcucGGCGUCGCucgGCGCGc -3'
miRNA:   3'- -GGUGCaGC-GACGG-------CCGCGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 99773 0.72 0.383942
Target:  5'- gCCGCccgCGgUGCCGGCGUCgacuacgaGCGCGCGc -3'
miRNA:   3'- -GGUGca-GCgACGGCCGCGG--------CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 44542 0.72 0.38937
Target:  5'- gCCGuCGUCGUcGCCGGCGgCGgcgcccguugacguCACGCGg -3'
miRNA:   3'- -GGU-GCAGCGaCGGCCGCgGC--------------GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 193291 0.72 0.391713
Target:  5'- gCCGguaGUCGCcGuCCGcuccGCGCCGCACGCa -3'
miRNA:   3'- -GGUg--CAGCGaC-GGC----CGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 34244 0.72 0.391713
Target:  5'- gCACG-CGCgGCUGcCGCCGCAgGCGg -3'
miRNA:   3'- gGUGCaGCGaCGGCcGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 121387 0.71 0.399585
Target:  5'- gCCGcCGggacCGCgGCCGGCGCCGgGacCGCGa -3'
miRNA:   3'- -GGU-GCa---GCGaCGGCCGCGGCgU--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 80481 0.71 0.399585
Target:  5'- uCCGCGUCGa-GCUGGCGCaccaccgGCACGUc -3'
miRNA:   3'- -GGUGCAGCgaCGGCCGCGg------CGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 59150 0.71 0.399585
Target:  5'- gCCGCGUCGC-GCaCGacaCGCUGCugGCGc -3'
miRNA:   3'- -GGUGCAGCGaCG-GCc--GCGGCGugCGC- -5'
10964 5' -62.7 NC_002794.1 + 137636 0.71 0.402762
Target:  5'- aCgACGUC-CUGgcgggcgccgggccuCCGGCGCCGCugGUGc -3'
miRNA:   3'- -GgUGCAGcGAC---------------GGCCGCGGCGugCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.