miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 106348 0.71 0.407558
Target:  5'- gCCGgGUCGaCggcggGCgGGCGCCGguuCGCGCGg -3'
miRNA:   3'- -GGUgCAGC-Ga----CGgCCGCGGC---GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 62747 0.71 0.407558
Target:  5'- cCCGCGgccgucUCGCU-CCGGCuccggcuguuucGCCGCGCGCc -3'
miRNA:   3'- -GGUGC------AGCGAcGGCCG------------CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 53911 0.71 0.415629
Target:  5'- uCCuCGUCGCcGUCGGCGgCGC-CGCc -3'
miRNA:   3'- -GGuGCAGCGaCGGCCGCgGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 102157 0.71 0.415629
Target:  5'- gCgGCGUgCGC-GCCGGgGCCaucgugGCGCGCGg -3'
miRNA:   3'- -GgUGCA-GCGaCGGCCgCGG------CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 63011 0.71 0.423799
Target:  5'- gCACGUgGCUggaGCUGGUGCuCGCcuGCGCGc -3'
miRNA:   3'- gGUGCAgCGA---CGGCCGCG-GCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 49447 0.71 0.423799
Target:  5'- gCGCgGUCGUcGCCguGGCGCCGC-CGUGa -3'
miRNA:   3'- gGUG-CAGCGaCGG--CCGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 55014 0.71 0.432063
Target:  5'- -gGCGUcCGCcGCC-GCGCCGC-CGCGa -3'
miRNA:   3'- ggUGCA-GCGaCGGcCGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 14480 0.71 0.432063
Target:  5'- gCCGCGcUCGCUGUucgCGGCGgcggcCCGCGCucGCGg -3'
miRNA:   3'- -GGUGC-AGCGACG---GCCGC-----GGCGUG--CGC- -5'
10964 5' -62.7 NC_002794.1 + 192315 0.71 0.432063
Target:  5'- uCCGCGcUCGCcGCCGcCGCCGCuuccuccucuuCGCGg -3'
miRNA:   3'- -GGUGC-AGCGaCGGCcGCGGCGu----------GCGC- -5'
10964 5' -62.7 NC_002794.1 + 12387 0.71 0.432063
Target:  5'- gCCGCGcUCGCcugGCCGacaaCCGCACGCGg -3'
miRNA:   3'- -GGUGC-AGCGa--CGGCcgc-GGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 56311 0.71 0.432063
Target:  5'- gUCGCgGUCGCUGgCGGCcgugGCCGgCgACGCGg -3'
miRNA:   3'- -GGUG-CAGCGACgGCCG----CGGC-G-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 103409 0.71 0.432063
Target:  5'- aCCACGUCGg-GCa-GCGCCGCGUGCa -3'
miRNA:   3'- -GGUGCAGCgaCGgcCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 195609 0.71 0.435395
Target:  5'- cCCGCGcUgGCguccggcccaaacgGCCGGCgacgacgaGCCGCACGCa -3'
miRNA:   3'- -GGUGC-AgCGa-------------CGGCCG--------CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 149678 0.71 0.44042
Target:  5'- gCGCGUCGCgcucgacugGCCgcgGGgGCCGcCugGCGg -3'
miRNA:   3'- gGUGCAGCGa--------CGG---CCgCGGC-GugCGC- -5'
10964 5' -62.7 NC_002794.1 + 121237 0.71 0.44042
Target:  5'- aCAguCGcCGCUGCCGcCGCCGCcgcCGCGg -3'
miRNA:   3'- gGU--GCaGCGACGGCcGCGGCGu--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 126277 0.71 0.44042
Target:  5'- -gGCGgCGCugggcuUGCUGuGCGCCGCGCGCc -3'
miRNA:   3'- ggUGCaGCG------ACGGC-CGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 49505 0.71 0.443789
Target:  5'- gCCGuCGUCGCUcGCCGgguacauggguucgcGCGCCGCGaGCa -3'
miRNA:   3'- -GGU-GCAGCGA-CGGC---------------CGCGGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 44856 0.7 0.448869
Target:  5'- aCCACGUCGUcgaGCCGcagaCGCUGCAacuCGCGg -3'
miRNA:   3'- -GGUGCAGCGa--CGGCc---GCGGCGU---GCGC- -5'
10964 5' -62.7 NC_002794.1 + 49096 0.7 0.448869
Target:  5'- aCC-CGUCGC-GCCGGCGCUcggcguccuGCAC-CGg -3'
miRNA:   3'- -GGuGCAGCGaCGGCCGCGG---------CGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 38622 0.7 0.448869
Target:  5'- gCGCGUCccgaCUcGCCGGUGCgGCGCGaCGg -3'
miRNA:   3'- gGUGCAGc---GA-CGGCCGCGgCGUGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.