miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 23689 0.66 0.725051
Target:  5'- aCACG-CGCcGCCGaggccccgaaGCGucccgaaCCGCGCGCGg -3'
miRNA:   3'- gGUGCaGCGaCGGC----------CGC-------GGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 60042 0.66 0.725051
Target:  5'- gCCGucUCGCUGCucaccuuCGGcCGCCGCACcGUGc -3'
miRNA:   3'- -GGUgcAGCGACG-------GCC-GCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 191487 0.66 0.723213
Target:  5'- gCCACGggcgaUCGUccgccaccgagaggUGCCaGCGCCGgGCGuCGg -3'
miRNA:   3'- -GGUGC-----AGCG--------------ACGGcCGCGGCgUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 190149 0.66 0.720451
Target:  5'- aCGCGUacUGCUGgCGGCGgcucuccucgaacacCCGC-CGCGc -3'
miRNA:   3'- gGUGCA--GCGACgGCCGC---------------GGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 79030 0.66 0.716759
Target:  5'- gCCGCcUU-CUGCCGGCccgGCCGCuccCGCGc -3'
miRNA:   3'- -GGUGcAGcGACGGCCG---CGGCGu--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 90657 0.66 0.716759
Target:  5'- aCACGcUCGCgccGuuGGgGCCGgcCGCGUGg -3'
miRNA:   3'- gGUGC-AGCGa--CggCCgCGGC--GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 103088 0.66 0.716759
Target:  5'- -aGCGUCGCgGCCcGCGC-GCGCGg- -3'
miRNA:   3'- ggUGCAGCGaCGGcCGCGgCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 66961 0.66 0.716759
Target:  5'- gCCGgcgaGUCGCUcGCCGGgGgaGCGuCGCGa -3'
miRNA:   3'- -GGUg---CAGCGA-CGGCCgCggCGU-GCGC- -5'
10964 5' -62.7 NC_002794.1 + 110265 0.66 0.716759
Target:  5'- gCgGCGUCGCga-CGGCGgCCGC-CGUc -3'
miRNA:   3'- -GgUGCAGCGacgGCCGC-GGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 100753 0.66 0.716759
Target:  5'- gCGCGucuaUCGCUgGCCGGuCGCgGaguaCACGCGc -3'
miRNA:   3'- gGUGC----AGCGA-CGGCC-GCGgC----GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 91144 0.66 0.716759
Target:  5'- gCGCGgacggUGCUGCUgGGCGCCGUggAgGCc -3'
miRNA:   3'- gGUGCa----GCGACGG-CCGCGGCG--UgCGc -5'
10964 5' -62.7 NC_002794.1 + 81548 0.66 0.716759
Target:  5'- gCugGaCgGCUGCCGcCGCCGC-CGCc -3'
miRNA:   3'- gGugCaG-CGACGGCcGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 84929 0.66 0.716759
Target:  5'- gCGCGgagCGCUccccacacGCgGaGCGCCcccgGCACGCGg -3'
miRNA:   3'- gGUGCa--GCGA--------CGgC-CGCGG----CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 41859 0.66 0.716759
Target:  5'- cCCAgGcCGCcgggcaggGCCgGGCGCUGcCACGCc -3'
miRNA:   3'- -GGUgCaGCGa-------CGG-CCGCGGC-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 59902 0.66 0.716759
Target:  5'- gCCGCGUgCGCaGCgacaugGGCGCC-CGCGUGc -3'
miRNA:   3'- -GGUGCA-GCGaCGg-----CCGCGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 193811 0.66 0.716759
Target:  5'- cCCGC-UCGU--CUGGCGCCG-ACGCGu -3'
miRNA:   3'- -GGUGcAGCGacGGCCGCGGCgUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 115607 0.66 0.716759
Target:  5'- cCCGC-UCGC--CCGGCGCCGgGagGCGg -3'
miRNA:   3'- -GGUGcAGCGacGGCCGCGGCgUg-CGC- -5'
10964 5' -62.7 NC_002794.1 + 186954 0.66 0.715835
Target:  5'- cCCGgGcCGCUgGCCGcCGCCuccagcaGCGCGCGc -3'
miRNA:   3'- -GGUgCaGCGA-CGGCcGCGG-------CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 194966 0.66 0.707487
Target:  5'- gCACGaacgccggcUCGUacagGCaCaGCGCCGCGCGCa -3'
miRNA:   3'- gGUGC---------AGCGa---CG-GcCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 35722 0.66 0.707487
Target:  5'- uCCACcUgGCcuCCGGCgGCCGCGCGUc -3'
miRNA:   3'- -GGUGcAgCGacGGCCG-CGGCGUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.