miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 113384 0.66 0.707487
Target:  5'- gCCGcCGUCG-UGCaGGCGCUGCA-GCa -3'
miRNA:   3'- -GGU-GCAGCgACGgCCGCGGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 35722 0.66 0.707487
Target:  5'- uCCACcUgGCcuCCGGCgGCCGCGCGUc -3'
miRNA:   3'- -GGUGcAgCGacGGCCG-CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 194966 0.66 0.707487
Target:  5'- gCACGaacgccggcUCGUacagGCaCaGCGCCGCGCGCa -3'
miRNA:   3'- gGUGC---------AGCGa---CG-GcCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 78412 0.66 0.707487
Target:  5'- gCCGCGacucucCGCUcCCGGCGUcaCGguCGCGg -3'
miRNA:   3'- -GGUGCa-----GCGAcGGCCGCG--GCguGCGC- -5'
10964 5' -62.7 NC_002794.1 + 58350 0.66 0.704694
Target:  5'- aCC-UGcCGCUcgGCCuGGCGCCGCccgacuuccaggagGCGCGc -3'
miRNA:   3'- -GGuGCaGCGA--CGG-CCGCGGCG--------------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 112327 0.66 0.698159
Target:  5'- aCgGCGgggagCGCgccgGCCGGCGgCGCcgGCgGCGg -3'
miRNA:   3'- -GgUGCa----GCGa---CGGCCGCgGCG--UG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 157661 0.66 0.698159
Target:  5'- cCCgACG-CGCUGgCGGCuuggGCCGCuugGCGUGc -3'
miRNA:   3'- -GG-UGCaGCGACgGCCG----CGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 187061 0.66 0.698159
Target:  5'- cCCGCG--GCccGCCaGGUGCCGCAgGCu -3'
miRNA:   3'- -GGUGCagCGa-CGG-CCGCGGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 184640 0.66 0.698159
Target:  5'- uCgGCGUCGC-GUCGGCGgCGUA-GCa -3'
miRNA:   3'- -GgUGCAGCGaCGGCCGCgGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 325 0.66 0.698159
Target:  5'- cCCACGcgCGCgccGCCGacaGCC-CGCGCGa -3'
miRNA:   3'- -GGUGCa-GCGa--CGGCcg-CGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 80391 0.66 0.698159
Target:  5'- gCCGCGacuaccuacUCGCcgcgGCCcagguGGCGCCGgGCGgGg -3'
miRNA:   3'- -GGUGC---------AGCGa---CGG-----CCGCGGCgUGCgC- -5'
10964 5' -62.7 NC_002794.1 + 113538 0.66 0.697224
Target:  5'- uCgGCGUCGCcgGCCcggagcaGGCGCCGgAC-CGu -3'
miRNA:   3'- -GgUGCAGCGa-CGG-------CCGCGGCgUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 28696 0.66 0.688784
Target:  5'- gCCGcCGUUGCUGCUGcUGCCGUcguCGCc -3'
miRNA:   3'- -GGU-GCAGCGACGGCcGCGGCGu--GCGc -5'
10964 5' -62.7 NC_002794.1 + 186852 0.66 0.688784
Target:  5'- gCGCGggCGCUGCCGuGCaGCaGCA-GCGg -3'
miRNA:   3'- gGUGCa-GCGACGGC-CG-CGgCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 62686 0.66 0.688784
Target:  5'- cCUGCGggugcaGCUGUguCGGCgGCCGCcgACGCGa -3'
miRNA:   3'- -GGUGCag----CGACG--GCCG-CGGCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 131547 0.66 0.688784
Target:  5'- aUCACGgccUCGCccgugGUCGGCGCgGCGCcCGu -3'
miRNA:   3'- -GGUGC---AGCGa----CGGCCGCGgCGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 108179 0.66 0.688784
Target:  5'- gCCGCGacgCGCggacUGCgagCGGCGCUGCGcCGCc -3'
miRNA:   3'- -GGUGCa--GCG----ACG---GCCGCGGCGU-GCGc -5'
10964 5' -62.7 NC_002794.1 + 179617 0.66 0.688784
Target:  5'- gCGCGagCGaCUGCCgGGCGCUGCgACGg- -3'
miRNA:   3'- gGUGCa-GC-GACGG-CCGCGGCG-UGCgc -5'
10964 5' -62.7 NC_002794.1 + 46124 0.66 0.685963
Target:  5'- cCCGCGUCgGCUcccccguccgaGUCGGCGUCGaucgcccucuggauCGCGCa -3'
miRNA:   3'- -GGUGCAG-CGA-----------CGGCCGCGGC--------------GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 110559 0.66 0.683139
Target:  5'- uCCGCGUCGUcGCCgucgucgaucgggaaGGUGCCGaagggguGCGUGa -3'
miRNA:   3'- -GGUGCAGCGaCGG---------------CCGCGGCg------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.