Results 61 - 80 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10964 | 5' | -62.7 | NC_002794.1 | + | 43227 | 0.66 | 0.679368 |
Target: 5'- aCCACGaugCGCUGCagCGGCaccgGCCGgaACGCc -3' miRNA: 3'- -GGUGCa--GCGACG--GCCG----CGGCg-UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 134156 | 0.66 | 0.679368 |
Target: 5'- uCCGUGUUGCUgGCCGuG-GCCGCGCGg- -3' miRNA: 3'- -GGUGCAGCGA-CGGC-CgCGGCGUGCgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 72525 | 0.66 | 0.679368 |
Target: 5'- uCCACcUCGaaGUagacGCGCCGCGCGUGg -3' miRNA: 3'- -GGUGcAGCgaCGgc--CGCGGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 62507 | 0.66 | 0.679368 |
Target: 5'- -gGCGgCGCcGCCGGCGCCuC-CGCc -3' miRNA: 3'- ggUGCaGCGaCGGCCGCGGcGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 59659 | 0.66 | 0.679368 |
Target: 5'- gCCACGgCGCUGCaga-GCCGCcuGCGCc -3' miRNA: 3'- -GGUGCaGCGACGgccgCGGCG--UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 149268 | 0.66 | 0.679368 |
Target: 5'- cCCuCGUCcCcGCCGGCGgCGCG-GCGg -3' miRNA: 3'- -GGuGCAGcGaCGGCCGCgGCGUgCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 187844 | 0.66 | 0.679368 |
Target: 5'- gCGCGcCGagggcuCUGCCca-GCCGCGCGCGg -3' miRNA: 3'- gGUGCaGC------GACGGccgCGGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 183195 | 0.66 | 0.679368 |
Target: 5'- aCGCGcCGCcacGCCGGCGgCGCGuucguCGCc -3' miRNA: 3'- gGUGCaGCGa--CGGCCGCgGCGU-----GCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 180683 | 0.66 | 0.679368 |
Target: 5'- gCCG-GcCGCUcCCGGCGCCcgGCGgGCGg -3' miRNA: 3'- -GGUgCaGCGAcGGCCGCGG--CGUgCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 126375 | 0.67 | 0.669919 |
Target: 5'- gCUGCGUgGgcgccggggcCUGCgCGGCGgCGUGCGCGg -3' miRNA: 3'- -GGUGCAgC----------GACG-GCCGCgGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 47749 | 0.67 | 0.669919 |
Target: 5'- uCCACGUgGCgGCCguGGuCGCgGCacaACGCGc -3' miRNA: 3'- -GGUGCAgCGaCGG--CC-GCGgCG---UGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 38497 | 0.67 | 0.669919 |
Target: 5'- gCGCGgcgGC-GCCGGuCGCCGC-CGCc -3' miRNA: 3'- gGUGCag-CGaCGGCC-GCGGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 184013 | 0.67 | 0.669919 |
Target: 5'- uCCACcaUCGCcgGCCgccacGGCaCCGCGCGCa -3' miRNA: 3'- -GGUGc-AGCGa-CGG-----CCGcGGCGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 127181 | 0.67 | 0.669919 |
Target: 5'- gCCGCaGUCGUcGCCGcG-GCCGCAgcCGCa -3' miRNA: 3'- -GGUG-CAGCGaCGGC-CgCGGCGU--GCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 59288 | 0.67 | 0.669919 |
Target: 5'- uCCGC-UCGCcGCuCGaCGCCGCGCaGCGc -3' miRNA: 3'- -GGUGcAGCGaCG-GCcGCGGCGUG-CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 187908 | 0.67 | 0.669919 |
Target: 5'- gCCGC-UCGCccGCCGGgcccCGCCGCGaccguCGCGu -3' miRNA: 3'- -GGUGcAGCGa-CGGCC----GCGGCGU-----GCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 67388 | 0.67 | 0.669919 |
Target: 5'- aCGCGUCgGCgccagcGUCGGCGCCaGCgucgGCGCc -3' miRNA: 3'- gGUGCAG-CGa-----CGGCCGCGG-CG----UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 188541 | 0.67 | 0.669919 |
Target: 5'- gCAggUGUCGCggcgGCgGGUacugcuGCCGCACGUGc -3' miRNA: 3'- gGU--GCAGCGa---CGgCCG------CGGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 49225 | 0.67 | 0.668972 |
Target: 5'- gCCGCGcCGCcaacaggGCCgucgacgGGCGCC-CGCGCa -3' miRNA: 3'- -GGUGCaGCGa------CGG-------CCGCGGcGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 32671 | 0.67 | 0.667078 |
Target: 5'- cCC-CGUCGUccGCCaaccguccuccggaGGCGUCGCGgGCGa -3' miRNA: 3'- -GGuGCAGCGa-CGG--------------CCGCGGCGUgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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