miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 79675 0.67 0.664236
Target:  5'- aCGCG-CGCUGCUuccucgagcagcucgGGcCGCCGCuCGUGu -3'
miRNA:   3'- gGUGCaGCGACGG---------------CC-GCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 48061 0.67 0.660443
Target:  5'- gCACGgCGCUgaugGCCGGCcagcgggagcaGCCGC-CGCu -3'
miRNA:   3'- gGUGCaGCGA----CGGCCG-----------CGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 181867 0.67 0.660443
Target:  5'- aUCACGcucCGCUGCCccGGgGUCGCgaacaggcgacaGCGCGg -3'
miRNA:   3'- -GGUGCa--GCGACGG--CCgCGGCG------------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 117665 0.67 0.660443
Target:  5'- gCCACG-CGC-GgCGGCGCguacUGCACGUa -3'
miRNA:   3'- -GGUGCaGCGaCgGCCGCG----GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 41239 0.67 0.660443
Target:  5'- cCCACGcCGCggccgccgacGCCGGCGgcCCGUcguCGCGc -3'
miRNA:   3'- -GGUGCaGCGa---------CGGCCGC--GGCGu--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 100092 0.67 0.660443
Target:  5'- uCCACGUcCGCgUG-CGGCGCgUGCA-GCGg -3'
miRNA:   3'- -GGUGCA-GCG-ACgGCCGCG-GCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 116919 0.67 0.660443
Target:  5'- cCgGCGUCgGCU-CCGGCGUCGUcgGCGUc -3'
miRNA:   3'- -GgUGCAG-CGAcGGCCGCGGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 192554 0.67 0.660443
Target:  5'- gCC-CGUCGUaG-CGGCaGgCGCACGCGa -3'
miRNA:   3'- -GGuGCAGCGaCgGCCG-CgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 107291 0.67 0.660443
Target:  5'- gCCcCGUCGUcgacGCUccucgcgggGGCGCCGUccGCGCGg -3'
miRNA:   3'- -GGuGCAGCGa---CGG---------CCGCGGCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 186721 0.67 0.656646
Target:  5'- gCC-CGUCGCUGCUauagcugcccaccGCGCCgaGCACGUa -3'
miRNA:   3'- -GGuGCAGCGACGGc------------CGCGG--CGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 104411 0.67 0.654747
Target:  5'- gCCGCGgccucggccucggcCGCcgGcCCGGaCGCCGC-CGCGg -3'
miRNA:   3'- -GGUGCa-------------GCGa-C-GGCC-GCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 190352 0.67 0.650947
Target:  5'- gUCAgGUCGUcgGCCGcGCGgCGCA-GCGg -3'
miRNA:   3'- -GGUgCAGCGa-CGGC-CGCgGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 49945 0.67 0.650947
Target:  5'- -gACGggcaggCGCUcCCGGuCGCCGguCGCGu -3'
miRNA:   3'- ggUGCa-----GCGAcGGCC-GCGGCguGCGC- -5'
10964 5' -62.7 NC_002794.1 + 107243 0.67 0.650947
Target:  5'- gCgGCGUCGCggaccugGcCCGGCggaGCCGCGC-CGu -3'
miRNA:   3'- -GgUGCAGCGa------C-GGCCG---CGGCGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 107774 0.67 0.650947
Target:  5'- gCGCGcUCGC--CCGGCGacgaccgcguCCGCGCGCa -3'
miRNA:   3'- gGUGC-AGCGacGGCCGC----------GGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 195110 0.67 0.650947
Target:  5'- aCgGCGUCucguGC-GCCcGCGgCGCGCGCGg -3'
miRNA:   3'- -GgUGCAG----CGaCGGcCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 60668 0.67 0.649996
Target:  5'- gCGCGcCGCcGCCgccuccgucgacgGGaGCCGCGCGCa -3'
miRNA:   3'- gGUGCaGCGaCGG-------------CCgCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 149374 0.67 0.647145
Target:  5'- uCCGCcgagaauaaaacCGCUGaCCGGCaacgucGCCGCGCGUGu -3'
miRNA:   3'- -GGUGca----------GCGAC-GGCCG------CGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 180901 0.67 0.647145
Target:  5'- gCCGCGgacucggcCGCggucucGCCGGCGCCGUcggaggucggucuCGCGu -3'
miRNA:   3'- -GGUGCa-------GCGa-----CGGCCGCGGCGu------------GCGC- -5'
10964 5' -62.7 NC_002794.1 + 153848 0.67 0.641438
Target:  5'- gCGCGUUGCcccccgccgUGCCGGCggaauuccuGCCGUucguccACGCGc -3'
miRNA:   3'- gGUGCAGCG---------ACGGCCG---------CGGCG------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.