miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 56913 0.67 0.641438
Target:  5'- gCCACGggcgccggGCUGCCGGCcUCGCAC-Ca -3'
miRNA:   3'- -GGUGCag------CGACGGCCGcGGCGUGcGc -5'
10964 5' -62.7 NC_002794.1 + 52761 0.67 0.641438
Target:  5'- aCCGCGcCGCgGCCcGgGCCGCGggauCGUGa -3'
miRNA:   3'- -GGUGCaGCGaCGGcCgCGGCGU----GCGC- -5'
10964 5' -62.7 NC_002794.1 + 153848 0.67 0.641438
Target:  5'- gCGCGUUGCcccccgccgUGCCGGCggaauuccuGCCGUucguccACGCGc -3'
miRNA:   3'- gGUGCAGCG---------ACGGCCG---------CGGCG------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 183684 0.67 0.641438
Target:  5'- aCGgGUCGagcGCC--CGCCGCGCGCGg -3'
miRNA:   3'- gGUgCAGCga-CGGccGCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 151556 0.67 0.635729
Target:  5'- aUCGaGUUGCUGCugacguagcgcccccCGGCGgCGCGCGCc -3'
miRNA:   3'- -GGUgCAGCGACG---------------GCCGCgGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 115929 0.67 0.631923
Target:  5'- gCGCGgcgGCggGCCGGC-CCGC-CGCGu -3'
miRNA:   3'- gGUGCag-CGa-CGGCCGcGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 56513 0.67 0.631923
Target:  5'- cCCGCGggCGCU-CCGGCGCuCGUuccgguCGCc -3'
miRNA:   3'- -GGUGCa-GCGAcGGCCGCG-GCGu-----GCGc -5'
10964 5' -62.7 NC_002794.1 + 103996 0.67 0.631923
Target:  5'- gCCGCGaagcCGCcGCCGGCGgaacgccuCCGCA-GCGa -3'
miRNA:   3'- -GGUGCa---GCGaCGGCCGC--------GGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 143524 0.67 0.631923
Target:  5'- gCACGUCGCccGCguccaggaGGCGCgGCACGa- -3'
miRNA:   3'- gGUGCAGCGa-CGg-------CCGCGgCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 113168 0.67 0.631923
Target:  5'- gCGCG-CGCgGgCGGCGgCGguCGCGg -3'
miRNA:   3'- gGUGCaGCGaCgGCCGCgGCguGCGC- -5'
10964 5' -62.7 NC_002794.1 + 145400 0.67 0.631923
Target:  5'- gCGCGcCGCgcgGCCuuaaaGCGCgGCGCGCc -3'
miRNA:   3'- gGUGCaGCGa--CGGc----CGCGgCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 195292 0.67 0.631923
Target:  5'- cCCGCGcacCGCUGCaCGcacCGCCGCGuCGCc -3'
miRNA:   3'- -GGUGCa--GCGACG-GCc--GCGGCGU-GCGc -5'
10964 5' -62.7 NC_002794.1 + 103953 0.67 0.630972
Target:  5'- gCCGC-UCGCcagccGCCGGCGCUucagacuGCGgGCGa -3'
miRNA:   3'- -GGUGcAGCGa----CGGCCGCGG-------CGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 11994 0.67 0.628117
Target:  5'- gCugGUUGCUGCUGuguggacugauguGCGCCGCcggcccgggcguccGCGCc -3'
miRNA:   3'- gGugCAGCGACGGC-------------CGCGGCG--------------UGCGc -5'
10964 5' -62.7 NC_002794.1 + 187593 0.67 0.622409
Target:  5'- gCCGcCGUCGCgacGcCCGGCGUCGCccagagcCGCu -3'
miRNA:   3'- -GGU-GCAGCGa--C-GGCCGCGGCGu------GCGc -5'
10964 5' -62.7 NC_002794.1 + 180375 0.67 0.622409
Target:  5'- gCGCGaggaCGCUGCCGGCcaGCUGCucgaACGgGa -3'
miRNA:   3'- gGUGCa---GCGACGGCCG--CGGCG----UGCgC- -5'
10964 5' -62.7 NC_002794.1 + 181518 0.67 0.618604
Target:  5'- uCCACGUCGUccguucgcccgccGCCGGCggGCCG-GCGCu -3'
miRNA:   3'- -GGUGCAGCGa------------CGGCCG--CGGCgUGCGc -5'
10964 5' -62.7 NC_002794.1 + 59345 0.68 0.615752
Target:  5'- aCCACGcgcucuacaacggcUGCUGCgccaccaCGGCGCCGCGCcugcuGCGg -3'
miRNA:   3'- -GGUGCa-------------GCGACG-------GCCGCGGCGUG-----CGC- -5'
10964 5' -62.7 NC_002794.1 + 18246 0.68 0.6129
Target:  5'- gCGCG-CGCggccGaCCGGCGaCCGCgagauGCGCGg -3'
miRNA:   3'- gGUGCaGCGa---C-GGCCGC-GGCG-----UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 91110 0.68 0.6129
Target:  5'- gUACGcCggGCaGCUGGUGCCGUGCGUGg -3'
miRNA:   3'- gGUGCaG--CGaCGGCCGCGGCGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.