miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 325 0.66 0.698159
Target:  5'- cCCACGcgCGCgccGCCGacaGCC-CGCGCGa -3'
miRNA:   3'- -GGUGCa-GCGa--CGGCcg-CGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 871 0.75 0.262207
Target:  5'- cCCGCGagGCgGUCGGCG-UGCGCGCGg -3'
miRNA:   3'- -GGUGCagCGaCGGCCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 6597 0.69 0.528557
Target:  5'- gCCAUGcUCGCggGCCGGaaccaGCCaCGCGUGa -3'
miRNA:   3'- -GGUGC-AGCGa-CGGCCg----CGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 11994 0.67 0.628117
Target:  5'- gCugGUUGCUGCUGuguggacugauguGCGCCGCcggcccgggcguccGCGCc -3'
miRNA:   3'- gGugCAGCGACGGC-------------CGCGGCG--------------UGCGc -5'
10964 5' -62.7 NC_002794.1 + 12168 0.74 0.268063
Target:  5'- cCCGgauCGUCGCcGCCGaCGCCGC-CGCGg -3'
miRNA:   3'- -GGU---GCAGCGaCGGCcGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 12227 0.7 0.466031
Target:  5'- uCgGCGgCGCcGgCGGCGCCGUcCGCGg -3'
miRNA:   3'- -GgUGCaGCGaCgGCCGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 12387 0.71 0.432063
Target:  5'- gCCGCGcUCGCcugGCCGacaaCCGCACGCGg -3'
miRNA:   3'- -GGUGC-AGCGa--CGGCcgc-GGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 14480 0.71 0.432063
Target:  5'- gCCGCGcUCGCUGUucgCGGCGgcggcCCGCGCucGCGg -3'
miRNA:   3'- -GGUGC-AGCGACG---GCCGC-----GGCGUG--CGC- -5'
10964 5' -62.7 NC_002794.1 + 14643 0.69 0.528557
Target:  5'- gCACGgagacGCCGGCGCCGCG-GCGu -3'
miRNA:   3'- gGUGCagcgaCGGCCGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 17425 0.7 0.448869
Target:  5'- aUCGCGgucuccgCGCcGCCGGCGCUcggGCcCGCGa -3'
miRNA:   3'- -GGUGCa------GCGaCGGCCGCGG---CGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 18246 0.68 0.6129
Target:  5'- gCGCG-CGCggccGaCCGGCGaCCGCgagauGCGCGg -3'
miRNA:   3'- gGUGCaGCGa---C-GGCCGC-GGCG-----UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 19303 0.77 0.201694
Target:  5'- gUCGCGUCGCUgaccgcccacgccgcGCUGGCGacCCGCGCGCc -3'
miRNA:   3'- -GGUGCAGCGA---------------CGGCCGC--GGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 19513 0.74 0.305424
Target:  5'- gUCGCGcCGCUcggagcGCCGGCGCgGCGCGg- -3'
miRNA:   3'- -GGUGCaGCGA------CGGCCGCGgCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 21449 0.73 0.346651
Target:  5'- cUCGCGUCGCU--CGGCGUCGC-CGUGa -3'
miRNA:   3'- -GGUGCAGCGAcgGCCGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 23689 0.66 0.725051
Target:  5'- aCACG-CGCcGCCGaggccccgaaGCGucccgaaCCGCGCGCGg -3'
miRNA:   3'- gGUGCaGCGaCGGC----------CGC-------GGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 28696 0.66 0.688784
Target:  5'- gCCGcCGUUGCUGCUGcUGCCGUcguCGCc -3'
miRNA:   3'- -GGU-GCAGCGACGGCcGCGGCGu--GCGc -5'
10964 5' -62.7 NC_002794.1 + 31384 0.66 0.725969
Target:  5'- cCC-CGUCGUcGgCGGCcCCGC-CGCGc -3'
miRNA:   3'- -GGuGCAGCGaCgGCCGcGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 31903 0.78 0.155527
Target:  5'- gCGCGUCGCUgaugagcGCCGacaggacguccagccGCGCCGCACGCu -3'
miRNA:   3'- gGUGCAGCGA-------CGGC---------------CGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 32671 0.67 0.667078
Target:  5'- cCC-CGUCGUccGCCaaccguccuccggaGGCGUCGCGgGCGa -3'
miRNA:   3'- -GGuGCAGCGa-CGG--------------CCGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 34039 0.68 0.593926
Target:  5'- gCCGCc-UGCUGCCGG-GCCGgccCGCGCa -3'
miRNA:   3'- -GGUGcaGCGACGGCCgCGGC---GUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.