miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 34244 0.72 0.391713
Target:  5'- gCACG-CGCgGCUGcCGCCGCAgGCGg -3'
miRNA:   3'- gGUGCaGCGaCGGCcGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 34723 0.7 0.466031
Target:  5'- gCCACGagGC-GCgGGCgGCCGCagaGCGCGc -3'
miRNA:   3'- -GGUGCagCGaCGgCCG-CGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 34851 0.81 0.107557
Target:  5'- -gGCGUCGgaGCgGGCGCCGCGgGCGc -3'
miRNA:   3'- ggUGCAGCgaCGgCCGCGGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 35542 0.69 0.537756
Target:  5'- aCCGCGa-Gac-CCGGCGCuCGCGCGCGc -3'
miRNA:   3'- -GGUGCagCgacGGCCGCG-GCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 35722 0.66 0.707487
Target:  5'- uCCACcUgGCcuCCGGCgGCCGCGCGUc -3'
miRNA:   3'- -GGUGcAgCGacGGCCG-CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 35764 0.72 0.353898
Target:  5'- aCgACGUCGCggcaccgucGCCGGCGUCGUcuccgGCGUGa -3'
miRNA:   3'- -GgUGCAGCGa--------CGGCCGCGGCG-----UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 36772 0.66 0.725969
Target:  5'- gCCACccaGCUguaGCCGGcCGCCGUguACGCc -3'
miRNA:   3'- -GGUGcagCGA---CGGCC-GCGGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 36905 0.7 0.466031
Target:  5'- uCCAgagGUCGCggcGCCGGCcCCGCGacCGCGg -3'
miRNA:   3'- -GGUg--CAGCGa--CGGCCGcGGCGU--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 36948 0.68 0.584473
Target:  5'- uCCGCGUCGCgcgGCggcaGGCaGUCGCgcaggaggaucGCGCGc -3'
miRNA:   3'- -GGUGCAGCGa--CGg---CCG-CGGCG-----------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 37728 0.7 0.448869
Target:  5'- cCCGCGagcggcggCGCcGCCGGCgGCgGCGCgGCGg -3'
miRNA:   3'- -GGUGCa-------GCGaCGGCCG-CGgCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 38432 0.66 0.726886
Target:  5'- uCCAUGgcgGCgggccggacugaggaGCCGGCGCgGC-CGCGg -3'
miRNA:   3'- -GGUGCag-CGa--------------CGGCCGCGgCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 38497 0.67 0.669919
Target:  5'- gCGCGgcgGC-GCCGGuCGCCGC-CGCc -3'
miRNA:   3'- gGUGCag-CGaCGGCC-GCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 38531 0.7 0.492391
Target:  5'- cCCAgGUCGCcGCCGcCGCCGCcucccCGCc -3'
miRNA:   3'- -GGUgCAGCGaCGGCcGCGGCGu----GCGc -5'
10964 5' -62.7 NC_002794.1 + 38622 0.7 0.448869
Target:  5'- gCGCGUCccgaCUcGCCGGUGCgGCGCGaCGg -3'
miRNA:   3'- gGUGCAGc---GA-CGGCCGCGgCGUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 40601 0.69 0.528557
Target:  5'- uCCGaGUCGUcGCCGGCGuCCGacucCGCGg -3'
miRNA:   3'- -GGUgCAGCGaCGGCCGC-GGCgu--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 41239 0.67 0.660443
Target:  5'- cCCACGcCGCggccgccgacGCCGGCGgcCCGUcguCGCGc -3'
miRNA:   3'- -GGUGCaGCGa---------CGGCCGC--GGCGu--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 41859 0.66 0.716759
Target:  5'- cCCAgGcCGCcgggcaggGCCgGGCGCUGcCACGCc -3'
miRNA:   3'- -GGUgCaGCGa-------CGG-CCGCGGC-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 42473 0.76 0.229239
Target:  5'- uCCAUGUCGCgcgcGCCGGgGCCGa--GCGg -3'
miRNA:   3'- -GGUGCAGCGa---CGGCCgCGGCgugCGC- -5'
10964 5' -62.7 NC_002794.1 + 43227 0.66 0.679368
Target:  5'- aCCACGaugCGCUGCagCGGCaccgGCCGgaACGCc -3'
miRNA:   3'- -GGUGCa--GCGACG--GCCG----CGGCg-UGCGc -5'
10964 5' -62.7 NC_002794.1 + 44008 0.72 0.361251
Target:  5'- gCACGgCGCgGCCGGCGuCCGCAgaccguCGCu -3'
miRNA:   3'- gGUGCaGCGaCGGCCGC-GGCGU------GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.